Literature DB >> 17121775

SNP2NMD: a database of human single nucleotide polymorphisms causing nonsense-mediated mRNA decay.

Areum Han1, Woo-Yeon Kim, Seong-Min Park.   

Abstract

UNLABELLED: Elucidating the effects of genetic polymorphisms on genes and gene networks is an important step in disease association studies. We developed the SNP2NMD database for human SNPs (single nucleotide polymorphisms) that result in PTCs (premature termination codons) and trigger nonsense-mediated mRNA decay (NMD). The SNP2NMD Web interfaces provide extensive genetic information on and graphical views of the queried SNP, gene, and disease terms. AVAILABILITY: SNP2NMD is available from http://variome.net, or directly from http://bioportal.kobic.re.kr/SNP2NMD. SUPPLEMENTARY INFORMATION: http://bioportal.kobic.re.kr/SNP2NMD/Wiki.jsp?page=Statistics.

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Year:  2006        PMID： 17121775     DOI： 10.1093/bioinformatics/btl593

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

Review 1.  Nonsense-mediated RNA decay regulation by cellular stress: implications for tumorigenesis.

Authors:  Lawrence B Gardner
Journal:  Mol Cancer Res       Date:  2010-02-23       Impact factor: 5.852

2.  PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation.

Authors:  Jian Ren; Chunhui Jiang; Xinjiao Gao; Zexian Liu; Zineng Yuan; Changjiang Jin; Longping Wen; Zhaolei Zhang; Yu Xue; Xuebiao Yao
Journal:  Mol Cell Proteomics       Date:  2009-12-08       Impact factor: 5.911

3.  A genome-wide survey of the prevalence and evolutionary forces acting on human nonsense SNPs.

Authors:  Bryndis Yngvadottir; Yali Xue; Steve Searle; Sarah Hunt; Marcos Delgado; Jonathan Morrison; Pamela Whittaker; Panos Deloukas; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2009-02-05       Impact factor: 11.025

4.  Distribution and effects of nonsense polymorphisms in human genes.

Authors:  Yumi Yamaguchi-Kabata; Makoto K Shimada; Yosuke Hayakawa; Shinsei Minoshima; Ranajit Chakraborty; Takashi Gojobori; Tadashi Imanishi
Journal:  PLoS One       Date:  2008-10-14       Impact factor: 3.240

5.  SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions.

Authors:  Byoung-Chul Kim; Woo-Yeon Kim; Daeui Park; Won-Hyong Chung; Kwang-Sik Shin; Jong Bhak
Journal:  BMC Bioinformatics       Date:  2008       Impact factor: 3.169

6.  The vertebrate genome annotation (Vega) database.

Authors:  L G Wilming; J G R Gilbert; K Howe; S Trevanion; T Hubbard; J L Harrow
Journal:  Nucleic Acids Res       Date:  2007-11-14       Impact factor: 16.971

7.  Nonsense-mediated mRNA decay immunity can help identify human polycistronic transcripts.

Authors:  Guy Shahaf; Dorit Shweiki
Journal:  PLoS One       Date:  2014-03-12       Impact factor: 3.240
  7 in total

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