Literature DB >> 17116406

Electric field effects on membranes: gramicidin A as a test ground.

Shirley W I Siu1, Rainer A Böckmann.   

Abstract

Electric fields due to transmembrane potential differences or ionic gradients across the membrane are presumably crucial for many reactions across membranes or close to membranes like signal transduction, control of ion channels or the generation of neural impulses. Molecular dynamics simulations have been used to study the influence of external electric fields on a mixed gramicidin/phospholipid bilayer system. At high field strengths, formation of membrane electropores occurred both close and distal to the gramicidin. Gramicidin was found to stabilize the membrane adjacent to the protein but also at larger distances of up to 2-3 nm. As a result, membrane pore formation was found to be significantly suppressed for the mixed gramicidin/DMPC system. Moderate field strengths only weakly affected the structure and dynamics of the gramicidin. Spontaneous potassium passage events in external electric fields were observed for both the head-to-head helical conformation as well as for the double helical conformation of gramicidin A. The double-helical conformation was found to facilitate ion passage compared to the head-to-head helical dimer.

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Year:  2006        PMID: 17116406     DOI: 10.1016/j.jsb.2006.10.005

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  6 in total

Review 1.  Constant electric field simulations of the membrane potential illustrated with simple systems.

Authors:  James Gumbart; Fatemeh Khalili-Araghi; Marcos Sotomayor; Benoît Roux
Journal:  Biochim Biophys Acta       Date:  2011-10-05

2.  Transitions between closed and open conformations of TolC: the effects of ions in simulations.

Authors:  Robert Schulz; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

3.  Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations.

Authors:  Rainer A Böckmann; Bert L de Groot; Sergej Kakorin; Eberhard Neumann; Helmut Grubmüller
Journal:  Biophys J       Date:  2008-05-09       Impact factor: 4.033

4.  Electrophoresis in protein crystal: nonequilibrium molecular dynamics simulations.

Authors:  Zhongqiao Hu; Jianwen Jiang
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

5.  Electric fields can control the transport of water in carbon nanotubes.

Authors:  Konstantinos Ritos; Matthew K Borg; Nigel J Mottram; Jason M Reese
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-02-13       Impact factor: 4.226

6.  In Vitro and MD Simulation Study to Explore Physicochemical Parameters for Antibacterial Peptide to Become Potent Anticancer Peptide.

Authors:  Rui Ma; Sin Wa Wong; Lilin Ge; Chris Shaw; Shirley W I Siu; Hang Fai Kwok
Journal:  Mol Ther Oncolytics       Date:  2019-12-10       Impact factor: 7.200

  6 in total

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