Literature DB >> 17113576

The sea urchin's siren.

Thoru Pederson1.   

Abstract

This issue of Developmental Biology features articles that constitute a new wave of insights into how a genome interacts with itself (as DNA) and with effectors-proteins and probably RNAs, collectively operating as a kind of "cis-trans" dualism. We learned a test for allelism in genetics class that bore that Latin name but now it comes as a new day for biological science-a welcome era in which a phenomenon as complex as development can be envisioned from principles of chemical binding energy and specificity. The buzzword (the term is just-as there is deserved buzz) is that the genome is hard-wired, in the sense that it has been shaped to both encode and react to a regulatory network, of which it is itself a part. I here review some of the milestones of embryology in which the sea urchin was the key player, segueing into the modern era in which this organism launched an entirely new intellectual construct of genome organization and gene expression during development. This essay also contains a number of personal perspectives as well as some views on the overall epistemological fabric of developmental biology. Like all of us, I am excited to see the S. purpuratus genome appear and heartily congratulate, by writing this essay, the trailblazers whose intellectual courage and persistence has brought us to this happy position.

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Year:  2006        PMID: 17113576     DOI: 10.1016/j.ydbio.2006.10.006

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  5 in total

Review 1.  A basal deuterostome genome viewed as a natural experiment.

Authors:  R Andrew Cameron; Eric H Davidson
Journal:  Gene       Date:  2007-05-06       Impact factor: 3.688

2.  Networking development by Boolean logic.

Authors:  Shikui Tu; Thoru Pederson; Zhiping Weng
Journal:  Nucleus       Date:  2013-02-14       Impact factor: 4.197

3.  Phylogenomics of strongylocentrotid sea urchins.

Authors:  Kord M Kober; Giacomo Bernardi
Journal:  BMC Evol Biol       Date:  2013-04-23       Impact factor: 3.260

4.  Genome-wide patterns of codon bias are shaped by natural selection in the purple sea urchin, Strongylocentrotus purpuratus.

Authors:  Kord M Kober; Grant H Pogson
Journal:  G3 (Bethesda)       Date:  2013-07-08       Impact factor: 3.154

5.  A Survey on Tubulin and Arginine Methyltransferase Families Sheds Light on P. lividus Embryo as Model System for Antiproliferative Drug Development.

Authors:  Maria Antonietta Ragusa; Aldo Nicosia; Salvatore Costa; Caterina Casano; Fabrizio Gianguzza
Journal:  Int J Mol Sci       Date:  2019-04-30       Impact factor: 5.923

  5 in total

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