Literature DB >> 17108226

The importance of careful blood processing in isolation of cell-free DNA.

Karen Page1, Tom Powles, Martin J Slade, Manuela Tamburo DE Bella, Rosemary A Walker, R Charles Coombes, Jacqueline A Shaw.   

Abstract

In healthy individuals, the source of cell-free plasma DNA is predominantly apoptotic, whereas, increased plasma DNA integrity is seen in cancer patients. Therefore, it is important to carefully isolate absolutely "cell-free" plasma DNA. Plasma DNA from 30 healthy females was analyzed using 4 PCR amplicons of increasing size, comparing standard blood processing with additional centrifugation steps prior to DNA extraction. Cellular DNA contamination, indicated by positive amplicons >300 bp was eliminated only after the extra centrifugation step. This highlights the importance of careful processing in preparation of cell-free plasma DNA as a tool for cancer detection and we recommend the use of a microcentrifuge spin, prior to DNA extraction.

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Year:  2006        PMID: 17108226     DOI: 10.1196/annals.1368.042

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  21 in total

1.  LINE-1 methylation in plasma DNA as a biomarker of activity of DNA methylation inhibitors in patients with solid tumors.

Authors:  Ana Aparicio; Brittany North; Lindsey Barske; Xuemei Wang; Valentina Bollati; Daniel Weisenberger; Christine Yoo; Nizar Tannir; Erin Horne; Susan Groshen; Peter Jones; Allen Yang; Jean-Pierre Issa
Journal:  Epigenetics       Date:  2009-04-06       Impact factor: 4.528

Review 2.  Role of liquid biopsy in oncogene-addicted non-small cell lung cancer.

Authors:  Matteo Canale; Luigi Pasini; Giuseppe Bronte; Angelo Delmonte; Paola Cravero; Lucio Crinò; Paola Ulivi
Journal:  Transl Lung Cancer Res       Date:  2019-11

Review 3.  Liquid biopsy: monitoring cancer-genetics in the blood.

Authors:  Emily Crowley; Federica Di Nicolantonio; Fotios Loupakis; Alberto Bardelli
Journal:  Nat Rev Clin Oncol       Date:  2013-07-09       Impact factor: 66.675

4.  Genomic analysis of circulating cell-free DNA infers breast cancer dormancy.

Authors:  Jacqueline A Shaw; Karen Page; Kevin Blighe; Natasha Hava; David Guttery; Becky Ward; James Brown; Chetana Ruangpratheep; Justin Stebbing; Rachel Payne; Carlo Palmieri; Suzy Cleator; Rosemary A Walker; R Charles Coombes
Journal:  Genome Res       Date:  2011-10-11       Impact factor: 9.043

5.  Sensitive screening of single nucleotide polymorphisms in cell free DNA for diagnosis of gestational tumours.

Authors:  Mark R Openshaw; Michael J Seckl; Geoffrey J Maher; Rosemary A Fisher; Baljeet Kaur; Xianne Aguiar; Preetha Aravind; Natashia Cedeno; James Clark; Debbie Damon; Ehsan Ghorani; Adam Januszewski; Foteini Kalofonou; Ravindhi Murphy; Rajat Roy; Naveed Sarwar
Journal:  NPJ Genom Med       Date:  2022-04-08       Impact factor: 8.617

6.  Target-based genomic profiling of ctDNA from Chinese non-small cell lung cancer patients: a result of real-world data.

Authors:  Huijuan Chen; Aiqin Wang; Jing Wang; Zeming He; Yanqiu Mao; Liming Liu
Journal:  J Cancer Res Clin Oncol       Date:  2020-03-27       Impact factor: 4.553

7.  Influence of plasma processing on recovery and analysis of circulating nucleic acids.

Authors:  Karen Page; David S Guttery; Nathalie Zahra; Lindsay Primrose; Shona R Elshaw; J Howard Pringle; Kevin Blighe; Stephanie D Marchese; Allison Hills; Laura Woodley; Justin Stebbing; R Charles Coombes; Jacqueline A Shaw
Journal:  PLoS One       Date:  2013-10-18       Impact factor: 3.240

8.  Detection of HER2 amplification in circulating free DNA in patients with breast cancer.

Authors:  K Page; N Hava; B Ward; J Brown; D S Guttery; C Ruangpratheep; K Blighe; A Sharma; R A Walker; R C Coombes; J A Shaw
Journal:  Br J Cancer       Date:  2011-03-22       Impact factor: 7.640

9.  The presence of disseminated tumour cells in the bone marrow is inversely related to circulating free DNA in plasma in breast cancer dormancy.

Authors:  R E Payne; N L Hava; K Page; K Blighe; B Ward; M Slade; J Brown; D S Guttery; S A A Zaidi; J Stebbing; J Jacob; E Yagüe; J A Shaw; R C Coombes
Journal:  Br J Cancer       Date:  2011-12-13       Impact factor: 7.640

10.  Circulating nucleic acids in plasma and serum: diagnosis and prognosis in cancer.

Authors:  Peter Brian Gahan
Journal:  EPMA J       Date:  2010-06-09       Impact factor: 6.543

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