Literature DB >> 17105484

Ensembles of Bayesian-regularized genetic neural networks for modeling of acetylcholinesterase inhibition by huprines.

Michael Fernández1, Julio Caballero.   

Abstract

Acetylcholinesterase inhibition was modeled for a set of huprines using ensembles of Bayesian-regularized Genetic Neural Networks. In the Bayesian-regularized Genetic Neural Network approach the Bayesian regularization avoids overfitted regressions and the genetic algorithm allows exploring a wide pool of three-dimensional descriptors. The predictive capacity of our selected model was evaluated by averaging multiple validation sets generated as members of neural network ensembles. When 60 members are assembled, the neural network ensemble provides a reliable measure of training and test set R(2)-values of 0.945 and 0.850 respectively. In other respects, the ability of the nonlinear selected genetic algorithm space for differentiate the data were evidenced when total data set was well distributed in a Kohonen self-organizing map. The analysis of the self-organizing map zones allows establishing the main structural features differentiated by our vectorial space.

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Year:  2006        PMID: 17105484     DOI: 10.1111/j.1747-0285.2006.00435.x

Source DB:  PubMed          Journal:  Chem Biol Drug Des        ISSN: 1747-0277            Impact factor:   2.817


  5 in total

1.  Computational analysis of HIV-1 protease protein binding pockets.

Authors:  Gene M Ko; A Srinivas Reddy; Sunil Kumar; Barbara A Bailey; Rajni Garg
Journal:  J Chem Inf Model       Date:  2010-10-25       Impact factor: 4.956

Review 2.  Genetic algorithm optimization in drug design QSAR: Bayesian-regularized genetic neural networks (BRGNN) and genetic algorithm-optimized support vectors machines (GA-SVM).

Authors:  Michael Fernandez; Julio Caballero; Leyden Fernandez; Akinori Sarai
Journal:  Mol Divers       Date:  2010-03-20       Impact factor: 2.943

3.  Docking and quantitative structure-activity relationship studies for sulfonyl hydrazides as inhibitors of cytosolic human branched-chain amino acid aminotransferase.

Authors:  Julio Caballero; Ariela Vergara-Jaque; Michael Fernández; Deysma Coll
Journal:  Mol Divers       Date:  2009-04-07       Impact factor: 2.943

4.  Predicting inhibitors of acetylcholinesterase by regression and classification machine learning approaches with combinations of molecular descriptors.

Authors:  Dmitriy Chekmarev; Vladyslav Kholodovych; Sandhya Kortagere; William J Welsh; Sean Ekins
Journal:  Pharm Res       Date:  2009-07-15       Impact factor: 4.200

5.  Predicting complex quantitative traits with Bayesian neural networks: a case study with Jersey cows and wheat.

Authors:  Daniel Gianola; Hayrettin Okut; Kent A Weigel; Guilherme Jm Rosa
Journal:  BMC Genet       Date:  2011-10-07       Impact factor: 2.797

  5 in total

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