Literature DB >> 17100

Glycosyl conformational and inductive effects on the acid catalysed hydrolysis of purine nucleosides.

F Jordan, H Niv.   

Abstract

The log kobs vs. pH profiles were determined in the intermediate acidity region for the glycosyl hydrolysis of guanosine and its 8-amino, 8-monomethylamino, 8-dimethylamino and 8-bromo derivatives. The decreased rate of the 8-amino and enhanced rate of the 8-bromo compound compared to guanosine support an A type mechanism: base protonation followed by glycosyl bond cleavage. All three 8-amino guanosines exhibited log kobs - pH profiles clearly showing that both mono and di-base protonated nucleosides undergo hydrolysis. The 700 fold rate acceleration of 8-N(CH3)-guanosine compared to 8-NHCH3-guanosine and the 110 fold rate acceleration of 8-N(CH3)2-adenosine compared to 8-NHCH3-adenosine could be unequivocally attributed to the fixed syn glycosyl conformation of both 8-dimethylamino compounds and relief of steric compression upon hydrolysis in these molecules. The lack of anomerization of all substrates during the course of the reaction supports an A rather than a Schiff-base mechanism.

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Year:  1977        PMID: 17100      PMCID: PMC342473          DOI: 10.1093/nar/4.3.697

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  18 in total

1.  Lennard-Jones potential calculations of the barrier to rotation around the glycosidic C-N linkage in selected purine nucleosides and nucleotides. A direct comparison of the results of 6-12 potential calculations with results of semiempirical molecular orbital studies.

Authors:  F Jordan
Journal:  J Theor Biol       Date:  1973-09-21       Impact factor: 2.691

2.  Kinetics and mechanism of the hydrolysis of guanosine and 7-methylguanosine nucleosides in perchloric acid.

Authors:  J A Zoltewicz; D F Clark
Journal:  J Org Chem       Date:  1972-04-21       Impact factor: 4.354

3.  Purine carbon-8 substituent as probe of the electronic structures of adenine and guanine. A computational study.

Authors:  F Jordan
Journal:  J Am Chem Soc       Date:  1974-09-04       Impact factor: 15.419

4.  Letter: Nucleic acid hydrolysis. I. Isomerization and anomerization of pyrimidic deoxyribonucleosides in an acidic medium.

Authors:  J Cadet; R Teoule
Journal:  J Am Chem Soc       Date:  1974-10-02       Impact factor: 15.419

5.  Solvolysis of adenine nucleosides. I. Effects of sugars and adenine substituents on acid solvolyses.

Authors:  E R Garrett; P J Mehta
Journal:  J Am Chem Soc       Date:  1972-11-29       Impact factor: 15.419

6.  Solvolysis of adenine nucleosides. II. Effects of sugars and adenine substituents on alkaline solvolyses.

Authors:  E R Garrett; P J Mehta
Journal:  J Am Chem Soc       Date:  1972-11-29       Impact factor: 15.419

7.  Contribution to the mechanism of the acid-catalyzed hydrolysis of purine nucleosides.

Authors:  L Hevesi; E Wolfson-Davidson; J B Nagy; O B Nagy; A Bruylants
Journal:  J Am Chem Soc       Date:  1972-06-28       Impact factor: 15.419

8.  Rate of depurination of native deoxyribonucleic acid.

Authors:  T Lindahl; B Nyberg
Journal:  Biochemistry       Date:  1972-09-12       Impact factor: 3.162

9.  Acidic hydrolysis of deoxycytidine and deoxyuridine derivatives. The general mechanism of deoxyribonucleoside hydrolysis.

Authors:  R Shapiro; M Danzig
Journal:  Biochemistry       Date:  1972-01-04       Impact factor: 3.162

10.  PURINE NUCLEOSIDES. IX. THE SYNTHESIS OF 9-BETA-D-RIBOFURANOSYL URIC ACID AND OTHER RELATED 8-SUBSTITUTED PURINE RIBONUCLEOSIDES.

Authors:  R E HOLMES; R K ROBINS
Journal:  J Am Chem Soc       Date:  1965-04-20       Impact factor: 15.419

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  4 in total

1.  High-resolution structure of the nitrile reductase QueF combined with molecular simulations provide insight into enzyme mechanism.

Authors:  Youngchang Kim; Min Zhou; Shiu Moy; Jennifer Morales; Mark A Cunningham; Andrzej Joachimiak
Journal:  J Mol Biol       Date:  2010-09-25       Impact factor: 5.469

2.  Kinetics and mechanism of the acid-catalyzed hydrolysis of a hypermodified nucleoside wyosine and its 5'-monophosphate.

Authors:  B Golankiewicz; E Zielonacka-Lis; W Folkman
Journal:  Nucleic Acids Res       Date:  1985-04-11       Impact factor: 16.971

3.  Mechanisms for the solvolytic decompositions of nucleoside analogues. X. Acidic hydrolysis of 6-substituted 9-(beta-D-ribofuranosyl)purines.

Authors:  H Lönnberg; P Lehikoinen
Journal:  Nucleic Acids Res       Date:  1982-07-24       Impact factor: 16.971

4.  Characterization of RNA-Like Oligomers from Lipid-Assisted Nonenzymatic Synthesis: Implications for Origin of Informational Molecules on Early Earth.

Authors:  Chaitanya V Mungi; Sudha Rajamani
Journal:  Life (Basel)       Date:  2015-01-05
  4 in total

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