Literature DB >> 17093486

The need for standards, not guidelines, in biological data reporting and sharing.

Lyle D Burgoon1.   

Abstract

Implementation of the Minimal information about a microarray experiment document provides several lessons for similar ongoing initiatives in other fields.

Mesh:

Year:  2006        PMID: 17093486     DOI: 10.1038/nbt1106-1369

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  11 in total

1.  MIFlowCyt: the minimum information about a Flow Cytometry Experiment.

Authors:  Jamie A Lee; Josef Spidlen; Keith Boyce; Jennifer Cai; Nicholas Crosbie; Mark Dalphin; Jeff Furlong; Maura Gasparetto; Michael Goldberg; Elizabeth M Goralczyk; Bill Hyun; Kirstin Jansen; Tobias Kollmann; Megan Kong; Robert Leif; Shannon McWeeney; Thomas D Moloshok; Wayne Moore; Garry Nolan; John Nolan; Janko Nikolich-Zugich; David Parrish; Barclay Purcell; Yu Qian; Biruntha Selvaraj; Clayton Smith; Olga Tchuvatkina; Anne Wertheimer; Peter Wilkinson; Christopher Wilson; James Wood; Robert Zigon; Richard H Scheuermann; Ryan R Brinkman
Journal:  Cytometry A       Date:  2008-10       Impact factor: 4.355

Review 2.  Gene profiling in experimental models of eye growth: clues to myopia pathogenesis.

Authors:  Richard A Stone; Tejvir S Khurana
Journal:  Vision Res       Date:  2010-04-02       Impact factor: 1.886

3.  The filamentous fungal gene expression database (FFGED).

Authors:  Zhang Zhang; Jeffrey P Townsend
Journal:  Fungal Genet Biol       Date:  2009-12-16       Impact factor: 3.495

Review 4.  Mining high-throughput experimental data to link gene and function.

Authors:  Crysten E Blaby-Haas; Valérie de Crécy-Lagard
Journal:  Trends Biotechnol       Date:  2011-04       Impact factor: 19.536

5.  Gene Fusion Markup Language: a prototype for exchanging gene fusion data.

Authors:  Shanker Kalyana-Sundaram; Achiraman Shanmugam; Arul M Chinnaiyan
Journal:  BMC Bioinformatics       Date:  2012-10-16       Impact factor: 3.169

Review 6.  Challenges and standards in integrating surveys of structural variation.

Authors:  Stephen W Scherer; Charles Lee; Ewan Birney; David M Altshuler; Evan E Eichler; Nigel P Carter; Matthew E Hurles; Lars Feuk
Journal:  Nat Genet       Date:  2007-07       Impact factor: 38.330

7.  Systems medicine: the future of medical genomics and healthcare.

Authors:  Charles Auffray; Zhu Chen; Leroy Hood
Journal:  Genome Med       Date:  2009-01-20       Impact factor: 11.117

8.  National Academy of Clinical Biochemistry Laboratory Medicine Practice Guidelines for use of tumor markers in clinical practice: quality requirements.

Authors:  Catharine M Sturgeon; Barry R Hoffman; Daniel W Chan; Soo-Ling Ch'ng; Elizabeth Hammond; Daniel F Hayes; Lance A Liotta; Emmanuel F Petricoin; Manfred Schmitt; O John Semmes; Györg Söletormos; Elena van der Merwe; Eleftherios P Diamandis
Journal:  Clin Chem       Date:  2008-07-07       Impact factor: 8.327

9.  Recombinant protein quality evaluation: proposal for a minimal information standard.

Authors:  Ashley M Buckle; Mark A Bate; Steve Androulakis; Mario Cinquanta; Jerome Basquin; Fabien Bonneau; Deb K Chatterjee; Davide Cittaro; Susanne Gräslund; Alicja Gruszka; Rebecca Page; Sabine Suppmann; Jun X Wheeler; Deborah Agostini; Mike Taussig; Chris F Taylor; Stephen P Bottomley; Antonio Villaverde; Ario de Marco
Journal:  Stand Genomic Sci       Date:  2011-11-22

10.  Toxicogenomic biomarkers for liver toxicity.

Authors:  Naoki Kiyosawa; Yosuke Ando; Sunao Manabe; Takashi Yamoto
Journal:  J Toxicol Pathol       Date:  2009-04-06       Impact factor: 1.628

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