Literature DB >> 17092038

Electronic structure, ionization potential, and electron affinity of the enzyme cofactor (6R)-5,6,7,8-tetrahydrobiopterin in the gas phase, solution, and protein environments.

Valentin Gogonea1, Jacinto M Shy, Pradip K Biswas.   

Abstract

(6R)-5,6,7,8-Tetrahydrobiopterin (BH(4)) is a key cofactor involved in the electron transfer to the P(450) heme of nitric oxide synthase. We calculated the electronic structure of the neutral, cationic, and anionic forms of BH(4) in the gas phase, in solution (both dielectric and explicit water), and in the protein environment using density functional theory (B3LYP/6-31+G(d,p)). Subsequently, we derived the ionization potential (IP) and electron affinity (EA) of the cofactor in these chemical environments. We found that the electronic structure of BH(4) is susceptible to the presence of an external electric field and that conformational changes in the structure of BH(4) alone do not affect its electronic structure significantly. In the gas phase, water, and protein environments neutral BH(4) is the most stable species, while in the dielectric environment the anion becomes the most stable species. The IP of BH(4) in the protein environment is about half of that in the gas phase, and its EA is about 5 times smaller than that in the gas phase. Our results indicate that changes in the external electric field created by moving charged amino acid residues around BH(4) may lead to configurations that have the BH(4) ion as stable as or more stable than the neutral form, thus facilitating the electron transfer.

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Year:  2006        PMID: 17092038      PMCID: PMC2533135          DOI: 10.1021/jp061653q

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  20 in total

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Journal:  Annu Rev Biochem       Date:  1999       Impact factor: 23.643

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Journal:  Chem Rev       Date:  1999-08-11       Impact factor: 60.622

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Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

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6.  Reaction of tetrahydrobiopterin with superoxide: EPR-kinetic analysis and characterization of the pteridine radical.

Authors:  J Vásquez-Vivar; J Whitsett; P Martásek; N Hogg; B Kalyanaraman
Journal:  Free Radic Biol Med       Date:  2001-10-15       Impact factor: 7.376

7.  Structure of tetrahydrobiopterin tunes its electron transfer to the heme-dioxy intermediate in nitric oxide synthase.

Authors:  Chin-Chuan Wei; Zhi-Qiang Wang; Andrew S Arvai; Craig Hemann; Russ Hille; Elizabeth D Getzoff; Dennis J Stuehr
Journal:  Biochemistry       Date:  2003-02-25       Impact factor: 3.162

8.  Chemical stabilization of tetrahydrobiopterin by L-ascorbic acid: contribution to placental endothelial nitric oxide synthase activity.

Authors:  Miklós Tóth; Zoltán Kukor; Sándor Valent
Journal:  Mol Hum Reprod       Date:  2002-03       Impact factor: 4.025

9.  Oxidation of tetrahydrobiopterin by peroxynitrite: implications for vascular endothelial function.

Authors:  S Milstien; Z Katusic
Journal:  Biochem Biophys Res Commun       Date:  1999-10-05       Impact factor: 3.575

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Journal:  J Biochem       Date:  1995-04       Impact factor: 3.387

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  9 in total

1.  Theoretical investigations of the dissociation of charged protein complexes in the gas phase.

Authors:  Surajith N Wanasundara; Mark Thachuk
Journal:  J Am Soc Mass Spectrom       Date:  2007-10-05       Impact factor: 3.109

2.  A polarizable force-field model for quantum-mechanical-molecular-mechanical Hamiltonian using expansion of point charges into orbitals.

Authors:  P K Biswas; Valentin Gogonea
Journal:  J Chem Phys       Date:  2008-10-21       Impact factor: 3.488

3.  The dynamics of camphor in the cytochrome P450 CYP101D2.

Authors:  Shabana Vohra; Maria Musgaard; Stephen G Bell; Luet-Lok Wong; Weihong Zhou; Philip C Biggin
Journal:  Protein Sci       Date:  2013-08-12       Impact factor: 6.725

4.  Two-dimensional NMR and all-atom molecular dynamics of cytochrome P450 CYP119 reveal hidden conformational substates.

Authors:  Jed N Lampe; Relly Brandman; Santhosh Sivaramakrishnan; Paul R Ortiz de Montellano
Journal:  J Biol Chem       Date:  2010-01-22       Impact factor: 5.157

5.  Characterization of diadzein-hemoglobin binding using optical spectroscopy and molecular dynamics simulations.

Authors:  Bidisha Sengupta; Sandipan Chakraborty; Maurice Crawford; Jasmine M Taylor; Laura E Blackmon; Pradip K Biswas; Wolfgang H Kramer
Journal:  Int J Biol Macromol       Date:  2012-05-16       Impact factor: 6.953

6.  Active-site residues move independently from the rest of the protein in a 200 ns molecular dynamics simulation of cytochrome P450 CYP119.

Authors:  Relly Brandman; Jed N Lampe; Yigal Brandman; Paul R Ortiz de Montellano
Journal:  Arch Biochem Biophys       Date:  2011-02-26       Impact factor: 4.013

7.  Perturbed heme binding is responsible for the blistering phenotype associated with mutations in the Caenorhabditis elegans dual oxidase 1 (DUOX1) peroxidase domain.

Authors:  Jennifer L Meitzler; Relly Brandman; Paul R Ortiz de Montellano
Journal:  J Biol Chem       Date:  2010-10-14       Impact factor: 5.157

Review 8.  Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms.

Authors:  Johannes Kirchmair; Mark J Williamson; Jonathan D Tyzack; Lu Tan; Peter J Bond; Andreas Bender; Robert C Glen
Journal:  J Chem Inf Model       Date:  2012-02-17       Impact factor: 4.956

9.  Electronic Structure and Solvation Effects from Core and Valence Photoelectron Spectroscopy of Serum Albumin.

Authors:  Jean-Philippe Renault; Lucie Huart; Aleksandar R Milosavljević; John D Bozek; Jerôme Palaudoux; Jean-Michel Guigner; Laurent Marichal; Jocelyne Leroy; Frank Wien; Marie-Anne Hervé Du Penhoat; Christophe Nicolas
Journal:  Int J Mol Sci       Date:  2022-07-26       Impact factor: 6.208

  9 in total

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