Literature DB >> 17089495

Molecular characterisation of the rotavirus strains prevalent in Maua, Meru North, Kenya.

N M Kiulia1, I Peenze, J Dewar, A Nyachieo, M Galo, E Omolo, A D Steele, J M Mwenda.   

Abstract

BACKGROUND: Rotavirus is the most common cause of severe infantile diarrhoea disease in infants and young children below five years worldwide. Rotavirus is associated with high cases of morbidity and mortality and it is estimated that up to 650,000 deaths in young children occur annually in the less developed countries and approximately 150,000-200,000 deaths occur in Africa alone.
OBJECTIVE: To characterise the circulating rotavirus strains in Maua, Meru North district, Kenya.
DESIGN: A prospective study to investigate and characterise rotavirus serotypes/genotypes and electropherotypes in infants and children with severe diarrhoea hospitalised and/or attending the outpatient department of Maua Methodist Hospital during the period April 2004 to September 2005.
SETTING: Maua Methodist Hospital, Meru North, Kenya.
SUBJECTS: Faecal samples were collected from 135 infants and children with acute diarrhoea and were screened first for the presence of human Group A rotavirus antigen using commercially available enzyme linked immunosorbent assay kit (ELISA). The positive samples were evaluated by sodium dodecyl polycrylamide gel electrophoresis (SDS-PAGE) to determine the viral RNA electropherotype profile. Rotavirus strains were also genotyped using reverse transcriptase polymerase chain reaction (RT-PCR) of the VP7 gene.
RESULTS: Assay of these samples with commercial ELISA showed that 17.8% (24/135) were positive for group A rotavirus antigen. Twenty of these ELISA positive samples were also analysed by SDS-PAGE of which 75% (15/20) gave detectable electropherotype pattern with the long electropherotype being predominant 80.0% (12/15) followed by the short RNA profile 20.0% (2/ 15). Seventeen of the ELISA positive samples were genotyped for VP7 and the results showed that G9 was the most predominant genotype comprising 47.1% (8/17) followed by G8 29.4% (5/17), GI 17.4% (3/17) and the mixed genotype was G8/G9 5.9% (1/17). Most patients with rotavirus infection were of the age of 3 - 60 months, with 79% being less than 18 months old.
CONCLUSION: The overall prevalence of rotavirus infection in young children with diarrhoea hospitalised and/or attending the out-patient department of Maua Methodist Hospital was 17.8% with the predominant serotype being G9. These results show that rotavirus plays an important role in severe viral diarrhoea in young children in Maua Meru North district, Kenya. Furthermore, this high G9 rotavirus prevalence in Kenya may require vaccine trials to be held in Kenya so as to determine the efficacy of new rotavirus vaccine candidates that do not include the G9 serotype.

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Year:  2006        PMID: 17089495     DOI: 10.4314/eamj.v83i7.9447

Source DB:  PubMed          Journal:  East Afr Med J        ISSN: 0012-835X


  9 in total

1.  Rotavirus genetic diversity, disease association, and temporal change in hospitalized rural Kenyan children.

Authors:  D James Nokes; Ina Peenze; Lufuno Netshifhefhe; John Abwao; Mariet C De Beer; Mapaseka Seheri; Thomas N Williams; Nicola Page; Duncan Steele
Journal:  J Infect Dis       Date:  2010-09-01       Impact factor: 5.226

2.  Rotavirus G and P types circulating in the eastern region of Kenya: predominance of G9 and emergence of G12 genotypes.

Authors:  Nicholas M Kiulia; Martin M Nyaga; Mapaseka L Seheri; Marianne Wolfaardt; Walda B van Zyl; Mathew D Esona; Grace Irimu; Murithi Inoti; Bernard W Gatinu; Peter K Njenga; Maureen B Taylor; Atunga Nyachieo
Journal:  Pediatr Infect Dis J       Date:  2014-01       Impact factor: 2.129

3.  Rotavirus infection among Sudanese children younger than 5 years of age: a cross sectional hospital-based study.

Authors:  Magzoub Abbas Magzoub; Naser Eldin Bilal; Jalal Ali Bilal; Omran Fadl Osman
Journal:  Pan Afr Med J       Date:  2013-11-10

4.  Human rotavirus group a serotypes causing gastroenteritis in children less than 5 years and HIV-infected adults in Viwandani slum, Nairobi.

Authors:  S K Raini; J Nyangao; J Kombich; C Sang; J Gikonyo; J R Ongus; E O Odari
Journal:  Ethiop J Health Sci       Date:  2015-01

5.  Molecular characterization of group A rotaviruses in Mukuru slums Kenya: detection of novel strains circulating in children below 5 years of age.

Authors:  Joshua Ndung'u Gikonyo; James Nyangao; Cecilia Mbae; Carlene Sang; Eliud Njagi; Joseph Ngeranwa; Mathew Esona; Mapaseka L Seheri; Grace W Gitau; Kedra Raini; Samuel Kariuki
Journal:  BMC Res Notes       Date:  2017-07-17

6.  Molecular characteristics of rotavirus genotypes circulating in the south of Benin, 2016-2018.

Authors:  Jijoho Michel Agbla; Mathew D Esona; Alidehou Jerrold Agbankpe; Annick Capo-Chichi; Rashi Gautam; Tamegnon Victorien Dougnon; Osseni Razack; Michael D Bowen; Honore Sourou Bankole
Journal:  BMC Res Notes       Date:  2020-10-19

7.  Prevalence of enteropathogenic viruses and molecular characterization of group A rotavirus among children with diarrhea in Dar es Salaam Tanzania.

Authors:  Sabrina J Moyo; Njolstad Gro; Vainio Kirsti; Mecky I Matee; Jesse Kitundu; Samwel Y Maselle; Nina Langeland; Helge Myrmel
Journal:  BMC Public Health       Date:  2007-12-27       Impact factor: 3.295

8.  Molecular epidemiology and associated risk factors of rotavirus infection among children < 5 yrs hospitalized for acute gastroenteritis in North Eastern, Kenya, 2012.

Authors:  Ahmed Mohamed Fidhow; Amwayi Samwel; Zipporah Ng'ang'a; Joseph Oundo; James Nyangao; Arvelo Wences
Journal:  Pan Afr Med J       Date:  2017-11-03

9.  Intragenic recombination influences rotavirus diversity and evolution.

Authors:  Irene Hoxie; John J Dennehy
Journal:  Virus Evol       Date:  2020-01-13
  9 in total

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