Literature DB >> 17085493

Structure and molecular mechanism of Bacillus anthracis cofactor-independent phosphoglycerate mutase: a crucial enzyme for spores and growing cells of Bacillus species.

Masatoshi Nukui1, Luciane V Mello, James E Littlejohn, Barbara Setlow, Peter Setlow, Kijeong Kim, Terrance Leighton, Mark J Jedrzejas.   

Abstract

Phosphoglycerate mutases (PGMs) catalyze the isomerization of 2- and 3-phosphoglycerates and are essential for glucose metabolism in most organisms. This study reports the production, structure, and molecular dynamics analysis of Bacillus anthracis cofactor-independent PGM (iPGM). The three-dimensional structure of B. anthracis PGM is composed of two structural and functional domains, the phosphatase and transferase. The structural relationship between these two domains is different than in the B. stearothermophilus iPGM structure determined previously. However, the structures of the two domains of B. anthracis iPGM show a high degree of similarity to those in B. stearothermophilus iPGM. The novel domain arrangement in B. anthracis iPGM and the dynamic property of these domains is directly linked to the mechanism of enzyme catalysis, in which substrate binding is proposed to result in close association of the two domains. The structure of B. anthracis iPGM and the molecular dynamics of this structure provide unique insight into the mechanism of iPGM catalysis, in particular the roles of changes in coordination geometry of the enzyme's two bivalent metal ions and the regulation of this enzyme's activity by changes in intracellular pH during spore formation and germination in Bacillus species.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17085493      PMCID: PMC1779985          DOI: 10.1529/biophysj.106.093872

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  53 in total

1.  Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element.

Authors:  S Chong; F B Mersha; D G Comb; M E Scott; D Landry; L M Vence; F B Perler; J Benner; R B Kucera; C A Hirvonen; J J Pelletier; H Paulus; M Q Xu
Journal:  Gene       Date:  1997-06-19       Impact factor: 3.688

2.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

Authors:  Alexander W Schüttelkopf; Daan M F van Aalten
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

3.  Structure and mechanism of action of a novel phosphoglycerate mutase from Bacillus stearothermophilus.

Authors:  M J Jedrzejas; M Chander; P Setlow; G Krishnasamy
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

4.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

5.  Structural studies on a 2,3-diphosphoglycerate independent phosphoglycerate mutase from Bacillus stearothermophilus.

Authors:  M Chander; P Setlow; E Lamani; M J Jedrzejas
Journal:  J Struct Biol       Date:  1999-06-15       Impact factor: 2.867

6.  Phosphoglycerate mutase from wheat germ: studies with isotopically labeled 3-phospho-D-glycerates showing that the catalyzed reaction is intramolecular. Appendix: phosphoglycerate mutase from wheat germ: isolation, crystallization, and properties.

Authors:  P F Leadlay; R Breathnach; J A Gatehouse; P E Johnson; J R Knowles
Journal:  Biochemistry       Date:  1977-07-12       Impact factor: 3.162

7.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria.

Authors:  Timothy D Read; Scott N Peterson; Nicolas Tourasse; Les W Baillie; Ian T Paulsen; Karen E Nelson; Hervé Tettelin; Derrick E Fouts; Jonathan A Eisen; Steven R Gill; Erik K Holtzapple; Ole Andreas Okstad; Erlendur Helgason; Jennifer Rilstone; Martin Wu; James F Kolonay; Maureen J Beanan; Robert J Dodson; Lauren M Brinkac; Michelle Gwinn; Robert T DeBoy; Ramana Madpu; Sean C Daugherty; A Scott Durkin; Daniel H Haft; William C Nelson; Jeremy D Peterson; Mihai Pop; Hoda M Khouri; Diana Radune; Jonathan L Benton; Yasmin Mahamoud; Lingxia Jiang; Ioana R Hance; Janice F Weidman; Kristi J Berry; Roger D Plaut; Alex M Wolf; Kisha L Watkins; William C Nierman; Alyson Hazen; Robin Cline; Caroline Redmond; Joanne E Thwaite; Owen White; Steven L Salzberg; Brendan Thomason; Arthur M Friedlander; Theresa M Koehler; Philip C Hanna; Anne-Brit Kolstø; Claire M Fraser
Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

8.  Structure and flexibility of Streptococcus agalactiae hyaluronate lyase complex with its substrate. Insights into the mechanism of processive degradation of hyaluronan.

Authors:  Luciane V Mello; Bert L De Groot; Songlin Li; Mark J Jedrzejas
Journal:  J Biol Chem       Date:  2002-07-18       Impact factor: 5.157

Review 9.  The structure and function of novel proteins of Bacillus anthracis and other spore-forming bacteria: development of novel prophylactic and therapeutic agents.

Authors:  Mark J Jedrzejas
Journal:  Crit Rev Biochem Mol Biol       Date:  2002       Impact factor: 8.250

10.  Structures of phosphate and trivanadate complexes of Bacillus stearothermophilus phosphatase PhoE: structural and functional analysis in the cofactor-dependent phosphoglycerate mutase superfamily.

Authors:  Daniel J Rigden; James E Littlejohn; Keith Henderson; Mark J Jedrzejas
Journal:  J Mol Biol       Date:  2003-01-17       Impact factor: 5.469

View more
  8 in total

1.  Unliganded structure of human bisphosphoglycerate mutase reveals side-chain movements induced by ligand binding.

Authors:  A Patterson; N C Price; J Nairn
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-27

2.  Expression, purification, crystallization and preliminary X-ray diffraction studies of phosphoglycerate mutase from Staphylococcus aureus NCTC8325.

Authors:  Amlan Roychowdhury; Anirban Kundu; Akanksha Gujar; Madhuparna Bose; Amit Kumar Das
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

3.  Comparative enzymology in the alkaline phosphatase superfamily to determine the catalytic role of an active-site metal ion.

Authors:  Jesse G Zalatan; Timothy D Fenn; Daniel Herschlag
Journal:  J Mol Biol       Date:  2008-10-02       Impact factor: 5.469

4.  Structural and Functional Characterization of the BcsG Subunit of the Cellulose Synthase in Salmonella typhimurium.

Authors:  Lei Sun; Peter Vella; Robert Schnell; Anna Polyakova; Gleb Bourenkov; Fengyang Li; Annika Cimdins; Thomas R Schneider; Ylva Lindqvist; Michael Y Galperin; Gunter Schneider; Ute Römling
Journal:  J Mol Biol       Date:  2018-07-12       Impact factor: 5.469

5.  Cofactor-independent phosphoglycerate mutase from nematodes has limited druggability, as revealed by two high-throughput screens.

Authors:  Gregory J Crowther; Michael L Booker; Min He; Ting Li; Sylvine Raverdy; Jacopo F Novelli; Panqing He; Natalie R G Dale; Amy M Fife; Robert H Barker; Martin L Kramer; Wesley C Van Voorhis; Clotilde K S Carlow; Ming-Wei Wang
Journal:  PLoS Negl Trop Dis       Date:  2014-01-09

6.  Cofactor independent phosphoglycerate mutase of Brugia malayi induces a mixed Th1/Th2 type immune response and inhibits larval development in the host.

Authors:  Prashant K Singh; Susheela Kushwaha; Ajay K Rana; Shailja Misra-Bhattacharya
Journal:  Biomed Res Int       Date:  2014-07-01       Impact factor: 3.411

7.  Identification of Genes Controlled by the Essential YycFG Two-Component System Reveals a Role for Biofilm Modulation in Staphylococcus epidermidis.

Authors:  Tao Xu; Yang Wu; Zhiwei Lin; Ralph Bertram; Friedrich Götz; Ying Zhang; Di Qu
Journal:  Front Microbiol       Date:  2017-04-26       Impact factor: 5.640

8.  Macrocycle peptides delineate locked-open inhibition mechanism for microorganism phosphoglycerate mutases.

Authors:  Hao Yu; Patricia Dranchak; Zhiru Li; Ryan MacArthur; Matthew S Munson; Nurjahan Mehzabeen; Nathan J Baird; Kevin P Battalie; David Ross; Scott Lovell; Clotilde K S Carlow; Hiroaki Suga; James Inglese
Journal:  Nat Commun       Date:  2017-04-03       Impact factor: 14.919

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.