Literature DB >> 17079095

Selective inhibition of Alu retrotransposition by APOBEC3G.

Amy E Hulme1, Hal P Bogerd, Bryan R Cullen, John V Moran.   

Abstract

The non-LTR retrotransposon LINE-1 (L1) comprises approximately 17% of the human genome, and the L1-encoded proteins can function in trans to mediate the retrotransposition of non-autonomous retrotransposons (i.e., Alu and probably SVA elements) and cellular mRNAs to generate processed pseudogenes. Here, we have examined the effect of APOBEC3G and APOBEC3F, cytidine deaminases that inhibit Vif-deficient HIV-1 replication, on Alu retrotransposition and other L1-mediated retrotransposition processes. We demonstrate that APOBEC3G selectively inhibits Alu retrotransposition in an ORF1p-independent manner. An active cytidine deaminase site is not required for the inhibition of Alu retrotransposition and the resultant integration events lack G to A or C to T hypermutation. These data demonstrate a differential restriction of L1 and Alu retrotransposition by APOBEC3G, and suggest that the Alu ribonucleoprotein complex may be targeted by APOBEC3G.

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Year:  2006        PMID: 17079095      PMCID: PMC2917221          DOI: 10.1016/j.gene.2006.08.032

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  50 in total

1.  APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses.

Authors:  Cécile Esnault; Odile Heidmann; Frédéric Delebecque; Marie Dewannieux; David Ribet; Allan J Hance; Thierry Heidmann; Olivier Schwartz
Journal:  Nature       Date:  2005-01-27       Impact factor: 49.962

2.  Alu retrotransposition-mediated deletion.

Authors:  Pauline A Callinan; Jianxin Wang; Scott W Herke; Randall K Garber; Ping Liang; Mark A Batzer
Journal:  J Mol Biol       Date:  2005-05-13       Impact factor: 5.469

3.  Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition.

Authors:  Deanna A Kulpa; John V Moran
Journal:  Hum Mol Genet       Date:  2005-09-23       Impact factor: 6.150

4.  Multiple fates of L1 retrotransposition intermediates in cultured human cells.

Authors:  Nicolas Gilbert; Sheila Lutz; Tammy A Morrish; John V Moran
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

5.  The retroviral hypermutation specificity of APOBEC3F and APOBEC3G is governed by the C-terminal DNA cytosine deaminase domain.

Authors:  Guylaine Haché; Mark T Liddament; Reuben S Harris
Journal:  J Biol Chem       Date:  2005-01-12       Impact factor: 5.157

6.  Complementary function of the two catalytic domains of APOBEC3G.

Authors:  Francisco Navarro; Brooke Bollman; Hui Chen; Renate König; Qin Yu; Kristopher Chiles; Nathaniel R Landau
Journal:  Virology       Date:  2005-03-15       Impact factor: 3.616

7.  APOBEC3G hypermutates genomic DNA and inhibits Ty1 retrotransposition in yeast.

Authors:  April J Schumacher; Dwight V Nissley; Reuben S Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-06       Impact factor: 11.205

8.  Inhibition of a yeast LTR retrotransposon by human APOBEC3 cytidine deaminases.

Authors:  James A Dutko; Alexandra Schäfer; Alison E Kenny; Bryan R Cullen; M Joan Curcio
Journal:  Curr Biol       Date:  2005-04-12       Impact factor: 10.834

9.  Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.

Authors:  Kyudong Han; Shurjo K Sen; Jianxin Wang; Pauline A Callinan; Jungnam Lee; Richard Cordaux; Ping Liang; Mark A Batzer
Journal:  Nucleic Acids Res       Date:  2005-07-20       Impact factor: 16.971

10.  APOBEC3A and APOBEC3B are potent inhibitors of LTR-retrotransposon function in human cells.

Authors:  Hal P Bogerd; Heather L Wiegand; Brian P Doehle; Kira K Lueders; Bryan R Cullen
Journal:  Nucleic Acids Res       Date:  2006-01-10       Impact factor: 16.971

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  93 in total

1.  Epigenetic control of retrotransposon expression in human embryonic stem cells.

Authors:  Angela Macia; Martin Muñoz-Lopez; Jose Luis Cortes; Robert K Hastings; Santiago Morell; Gema Lucena-Aguilar; Juan Antonio Marchal; Richard M Badge; Jose Luis Garcia-Perez
Journal:  Mol Cell Biol       Date:  2010-11-01       Impact factor: 4.272

Review 2.  Functions and regulation of the APOBEC family of proteins.

Authors:  Harold C Smith; Ryan P Bennett; Ayse Kizilyer; William M McDougall; Kimberly M Prohaska
Journal:  Semin Cell Dev Biol       Date:  2011-10-06       Impact factor: 7.727

Review 3.  Host restriction factors blocking retroviral replication.

Authors:  Daniel Wolf; Stephen P Goff
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

Review 4.  The take and give between retrotransposable elements and their hosts.

Authors:  Arthur Beauregard; M Joan Curcio; Marlene Belfort
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

5.  Footprint of APOBEC3 on the genome of human retroelements.

Authors:  Firoz Anwar; Miles P Davenport; Diako Ebrahimi
Journal:  J Virol       Date:  2013-05-22       Impact factor: 5.103

Review 6.  Unveiling Human Non-Random Genome Editing Mechanisms Activated in Response to Chronic Environmental Changes: I. Where Might These Mechanisms Come from and What Might They Have Led To?

Authors:  Loris Zamai
Journal:  Cells       Date:  2020-10-27       Impact factor: 6.600

7.  Functional analysis and structural modeling of human APOBEC3G reveal the role of evolutionarily conserved elements in the inhibition of human immunodeficiency virus type 1 infection and Alu transposition.

Authors:  Yannick Bulliard; Priscilla Turelli; Ute F Röhrig; Vincent Zoete; Bastien Mangeat; Olivier Michielin; Didier Trono
Journal:  J Virol       Date:  2009-09-23       Impact factor: 5.103

8.  Hypermutation of an ancient human retrovirus by APOBEC3G.

Authors:  Young Nam Lee; Michael H Malim; Paul D Bieniasz
Journal:  J Virol       Date:  2008-06-18       Impact factor: 5.103

9.  Exosomes packaging APOBEC3G confer human immunodeficiency virus resistance to recipient cells.

Authors:  Atanu K Khatua; Harry E Taylor; James E K Hildreth; Waldemar Popik
Journal:  J Virol       Date:  2008-11-05       Impact factor: 5.103

10.  Sole copy of Z2-type human cytidine deaminase APOBEC3H has inhibitory activity against retrotransposons and HIV-1.

Authors:  Lindi Tan; Phuong Thi Nguyen Sarkis; Tao Wang; Chunjuan Tian; Xiao-Fang Yu
Journal:  FASEB J       Date:  2008-09-30       Impact factor: 5.191

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