Literature DB >> 17077504

Crystallization and preliminary X-ray diffraction analysis of phospholipid-bound Sfh1p, a member of the Saccharomyces cerevisiae Sec14p-like phosphatidylinositol transfer protein family.

Gabriel Schaaf1, Laurie Betts, Teresa A Garrett, Christian R H Raetz, Vytas A Bankaitis.   

Abstract

Sec14p is the major phosphatidylinositol (PtdIns)/phosphatidylcholine (PtdCho) transfer protein in the budding yeast Saccharomyces cerevisiae and is the founding member of a large eukaryotic protein superfamily. This protein catalyzes the exchange of either PtdIns or PtdCho between membrane bilayers in vitro and this exchange reaction requires no external input of energy or of other protein cofactors. Despite the previous elucidation of the crystal structure of a detergent-bound form of Sec14p, the conformational changes that accompany the phospholipid-exchange reaction remain undefined. Moreover, a structural appreciation of how Sec14p or its homologs bind their various phospholipid substrates remains elusive. Here, the purification and crystallization of yeast Sfh1p, the protein most closely related to Sec14p, are reported. A combination of electrospray ionization mass-spectrometry and collision-induced decomposition mass-spectrometry methods indicate that recombinant Sfh1p loads predominantly with phosphatidylethanolamine. Unlike phospholipid-bound forms of Sec14p, this form of Sfh1p crystallizes readily in the absence of detergent. Sfh1p crystals diffract to 2.5 A and belong to the orthorhombic primitive space group P2(1)2(1)2(1), with unit-cell parameters a = 49.40, b = 71.55, c = 98.21 A, alpha = beta = gamma = 90 degrees. One Sfh1p molecule is present in the asymmetric unit (V(M) = 2.5 A(3) Da(-1); V(s) = 50%). Crystallization of a phospholipid-bound Sec14p-like protein is a critical first step in obtaining the first high-resolution picture of how proteins of the Sec14p superfamily bind their phospholipid ligands. This information will significantly extend our current understanding of how Sec14p-like proteins catalyze phospholipid exchange.

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Year:  2006        PMID: 17077504      PMCID: PMC2225215          DOI: 10.1107/S1744309106041728

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  25 in total

1.  Sec14p-like domains in NF1 and Dbl-like proteins indicate lipid regulation of Ras and Rho signaling.

Authors:  L Aravind; A F Neuwald; C P Ponting
Journal:  Curr Biol       Date:  1999-03-25       Impact factor: 10.834

2.  A rapid method of total lipid extraction and purification.

Authors:  E G BLIGH; W J DYER
Journal:  Can J Biochem Physiol       Date:  1959-08

3.  Structure of a multifunctional protein. Mammalian phosphatidylinositol transfer protein complexed with phosphatidylcholine.

Authors:  M D Yoder; L M Thomas; J M Tremblay; R L Oliver; L R Yarbrough; G M Helmkamp
Journal:  J Biol Chem       Date:  2000-12-04       Impact factor: 5.157

4.  The Schizosaccharomyces pombe spo20(+) gene encoding a homologue of Saccharomyces cerevisiae Sec14 plays an important role in forespore membrane formation.

Authors:  Y Nakase; T Nakamura; A Hirata; S M Routt; H B Skinner; V A Bankaitis; C Shimoda
Journal:  Mol Biol Cell       Date:  2001-04       Impact factor: 4.138

5.  Identification of a novel family of nonclassic yeast phosphatidylinositol transfer proteins whose function modulates phospholipase D activity and Sec14p-independent cell growth.

Authors:  X Li; S M Routt; Z Xie; X Cui; M Fang; M A Kearns; M Bard; D R Kirsch; V A Bankaitis
Journal:  Mol Biol Cell       Date:  2000-06       Impact factor: 4.138

6.  Yeast Sec14p deficient in phosphatidylinositol transfer activity is functional in vivo.

Authors:  S E Phillips; B Sha; L Topalof; Z Xie; J G Alb; V A Klenchin; P Swigart; S Cockcroft; T F Martin; M Luo; V A Bankaitis
Journal:  Mol Cell       Date:  1999-08       Impact factor: 17.970

7.  Activity of specific lipid-regulated ADP ribosylation factor-GTPase-activating proteins is required for Sec14p-dependent Golgi secretory function in yeast.

Authors:  Lora L Yanagisawa; Jennifer Marchena; Zhigang Xie; Xinmin Li; Pak P Poon; Richard A Singer; Gerald C Johnston; Paul A Randazzo; Vytas A Bankaitis
Journal:  Mol Biol Cell       Date:  2002-07       Impact factor: 4.138

8.  The molecular basis of vitamin E retention: structure of human alpha-tocopherol transfer protein.

Authors:  Reto Meier; Takashi Tomizaki; Clemens Schulze-Briese; Ulrich Baumann; Achim Stocker
Journal:  J Mol Biol       Date:  2003-08-15       Impact factor: 5.469

Review 9.  Electrospray mass spectrometry of phospholipids.

Authors:  Melissa Pulfer; Robert C Murphy
Journal:  Mass Spectrom Rev       Date:  2003 Sep-Oct       Impact factor: 10.946

10.  Analysis of oxysterol binding protein homologue Kes1p function in regulation of Sec14p-dependent protein transport from the yeast Golgi complex.

Authors:  Xinmin Li; Marcos P Rivas; Min Fang; Jennifer Marchena; Bharat Mehrotra; Anu Chaudhary; Li Feng; Glenn D Prestwich; Vytas A Bankaitis
Journal:  J Cell Biol       Date:  2002-03-26       Impact factor: 10.539

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  15 in total

Review 1.  The Sec14-superfamily and the regulatory interface between phospholipid metabolism and membrane trafficking.

Authors:  Carl J Mousley; Kimberly R Tyeryar; Patrick Vincent-Pope; Vytas A Bankaitis
Journal:  Biochim Biophys Acta       Date:  2007-04-12

2.  A blueprint for functional engineering: Single point mutations reconstitute phosphatidylinositol presentation in a pseudo-Sec14 protein.

Authors:  Eva M Winklbauer; Marília K F de Campos; Marek Dynowski; Gabriel Schaaf
Journal:  Commun Integr Biol       Date:  2011-11-01

3.  Target Identification and Mechanism of Action of Picolinamide and Benzamide Chemotypes with Antifungal Properties.

Authors:  Verena Pries; Christina Nöcker; Danish Khan; Philipp Johnen; Zebin Hong; Ashutosh Tripathi; Anna-Lena Keller; Michael Fitz; Francesca Perruccio; Ireos Filipuzzi; Sasikala Thavam; Thomas Aust; Ralph Riedl; Slava Ziegler; Fulvia Bono; Gabriel Schaaf; Vytas A Bankaitis; Herbert Waldmann; Dominic Hoepfner
Journal:  Cell Chem Biol       Date:  2018-01-04       Impact factor: 8.116

4.  The contribution of surface residues to membrane binding and ligand transfer by the α-tocopherol transfer protein (α-TTP).

Authors:  Wen Xiao Zhang; Varsha Thakur; Andrei Lomize; Irina Pogozheva; Candace Panagabko; Matt Cecchini; Matilda Baptist; Samantha Morley; Danny Manor; Jeffrey Atkinson
Journal:  J Mol Biol       Date:  2010-11-24       Impact factor: 5.469

5.  Arabidopsis PFA-DSP-Type Phosphohydrolases Target Specific Inositol Pyrophosphate Messengers.

Authors:  Philipp Gaugler; Robin Schneider; Guizhen Liu; Danye Qiu; Jonathan Weber; Jochen Schmid; Nikolaus Jork; Markus Häner; Kevin Ritter; Nicolás Fernández-Rebollo; Ricardo F H Giehl; Minh Nguyen Trung; Ranjana Yadav; Dorothea Fiedler; Verena Gaugler; Henning J Jessen; Gabriel Schaaf; Debabrata Laha
Journal:  Biochemistry       Date:  2022-05-31       Impact factor: 3.321

6.  Alternative splicing and gene polymorphism of the human TAP3/SEC14L4 gene.

Authors:  Petra Kempna; Roberta Ricciarelli; Angelo Azzi; Jean-Marc Zingg
Journal:  Mol Biol Rep       Date:  2009-12-10       Impact factor: 2.316

7.  Phosphatidic acid and N-acylphosphatidylethanolamine form membrane domains in Escherichia coli mutant lacking cardiolipin and phosphatidylglycerol.

Authors:  Eugenia Mileykovskaya; Andrea C Ryan; Xi Mo; Chun-Chieh Lin; Khaled I Khalaf; William Dowhan; Teresa A Garrett
Journal:  J Biol Chem       Date:  2008-12-01       Impact factor: 5.157

8.  Identification of phosphatidylserylglutamate: a novel minor lipid in Escherichia coli.

Authors:  Teresa A Garrett; Christian R H Raetz; Travis Richardson; Reza Kordestani; Jennifer D Son; Rebecca L Rose
Journal:  J Lipid Res       Date:  2008-12-18       Impact factor: 5.922

9.  Conformational dynamics of the major yeast phosphatidylinositol transfer protein sec14p: insight into the mechanisms of phospholipid exchange and diseases of sec14p-like protein deficiencies.

Authors:  Margaret M Ryan; Brenda R S Temple; Scott E Phillips; Vytas A Bankaitis
Journal:  Mol Biol Cell       Date:  2007-03-07       Impact factor: 4.138

10.  Resurrection of a functional phosphatidylinositol transfer protein from a pseudo-Sec14 scaffold by directed evolution.

Authors:  Gabriel Schaaf; Marek Dynowski; Carl J Mousley; Sweety D Shah; Peihua Yuan; Eva M Winklbauer; Marília K F de Campos; Kyle Trettin; Mary-Chely Quinones; Tatyana I Smirnova; Lora L Yanagisawa; Eric A Ortlund; Vytas A Bankaitis
Journal:  Mol Biol Cell       Date:  2011-01-19       Impact factor: 4.138

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