Literature DB >> 17077501

Overexpression, crystallization and preliminary X-ray crystallographic analysis of a putative transposase from Thermoplasma acidophilum encoded by the Ta0474 gene.

Ji Yong Kang1, Hyung Ho Lee, Do Jin Kim, Sang Hee Han, Olesya Kim, Hyoun Sook Kim, Sang Jae Lee, Se Won Suh.   

Abstract

IS200 transposases, originally identified in Salmonella typhimurium LT2, are present in many bacteria and archaea and are distinct from other groups of transposases. To facilitate further structural comparisons among IS200-like transposases, structural analysis has been initiated of a putative transposase from Thermoplasma acidophilum encoded by the Ta0474 gene. Its 137-residue polypeptide shows high levels of sequence similarity to other members of the IS200 transposase family. The protein was overexpressed in intact form in Escherichia coli and crystallized at 297 K using a reservoir solution consisting of 100 mM Na HEPES pH 7.5 and 20%(v/v) ethanol. X-ray diffraction data were collected to 1.78 A. The crystals belong to the monoclinic space group P2(1), with unit-cell parameters a = 65.00, b = 34.07, c = 121.58 A, alpha = 90, beta = 100.20, gamma = 90 degrees. Four monomers, representing two copies of a dimeric molecule, are present in the asymmetric unit, giving a crystal volume per protein weight (V(M)) of 2.02 A(3) Da(-1) and a solvent content of 39.2%.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17077501      PMCID: PMC2225201          DOI: 10.1107/S174430910604245X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  10 in total

1.  The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum.

Authors:  A Ruepp; W Graml; M L Santos-Martinez; K K Koretke; C Volker; H W Mewes; D Frishman; S Stocker; A N Lupas; W Baumeister
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

Review 2.  The outs and ins of transposition: from mu to kangaroo.

Authors:  M Joan Curcio; Keith M Derbyshire
Journal:  Nat Rev Mol Cell Biol       Date:  2003-11       Impact factor: 94.444

3.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

4.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

5.  Transposition of ISHp608, member of an unusual family of bacterial insertion sequences.

Authors:  Bao Ton-Hoang; Catherine Guynet; Donald R Ronning; Brigitte Cointin-Marty; Fred Dyda; Michael Chandler
Journal:  EMBO J       Date:  2005-09-15       Impact factor: 11.598

6.  Crystal structure of a metal ion-bound IS200 transposase.

Authors:  Hyung Ho Lee; Ji Young Yoon; Hyoun Sook Kim; Ji Yong Kang; Kyoung Hoon Kim; Do Jin Kim; Jun Yong Ha; Bunzo Mikami; Hye Jin Yoon; Se Won Suh
Journal:  J Biol Chem       Date:  2005-12-11       Impact factor: 5.157

7.  Active site sharing and subterminal hairpin recognition in a new class of DNA transposases.

Authors:  Donald R Ronning; Catherine Guynet; Bao Ton-Hoang; Zhanita N Perez; Rodolfo Ghirlando; Michael Chandler; Fred Dyda
Journal:  Mol Cell       Date:  2005-10-07       Impact factor: 17.970

8.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

9.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

Review 10.  IS200: an old and still bacterial transposon.

Authors:  Carmen R Beuzón; Daniela Chessa; Josep Casadesús
Journal:  Int Microbiol       Date:  2004-03       Impact factor: 2.479

  10 in total
  1 in total

1.  Prediction and characterization of small non-coding RNAs related to secondary metabolites in Saccharopolyspora erythraea.

Authors:  Wei-Bing Liu; Yang Shi; Li-Li Yao; Ying Zhou; Bang-Ce Ye
Journal:  PLoS One       Date:  2013-11-13       Impact factor: 3.240

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.