Literature DB >> 17077485

Crystallization and structural analysis of GADPH from Spinacia oleracea in a new form.

Ana Cámara-Artigas1, Masakazu Hirasawa, David B Knaff, Meitian Wang, James P Allen.   

Abstract

Two crystalline forms of GADPH (D-glyceraldehyde-3-phosphate dehydrogenase) from Spinacia oleracea were obtained using sitting-drop vapor diffusion. Despite the very low concentration of GADPH in the solutions, two crystalline forms were obtained, one of which was the previously reported C222 space group with unit-cell parameters a = 155.3, b = 181.7, c = 107.6 A and the other of which belonged to a new space group I4(1)22, with unit-cell parameters a = b = 120.9, c = 154.5 A. Diffraction data were measured from both native and derivatives, yielding structures at a resolution limit of 3.0 A. Differences at the NAD(+)/NADP(+)-binding site seen in these structures compared with the previously reported structure with bound coenzyme suggest that conformational changes associated with pyridine-nucleotide binding may play a role in the regulation of this enzyme.

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Year:  2006        PMID: 17077485      PMCID: PMC2225226          DOI: 10.1107/S174430910604200X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  19 in total

1.  The evolution of glutamate synthase.

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2.  Integration of macromolecular diffraction data.

Authors:  A G Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

3.  Cross-talk and ammonia channeling between active centers in the unexpected domain arrangement of glutamate synthase.

Authors:  C Binda; R T Bossi; S Wakatsuki; S Arzt; A Coda; B Curti; M A Vanoni; A Mattevi
Journal:  Structure       Date:  2000-12-15       Impact factor: 5.006

4.  Calvin cycle multienzyme complexes are bound to chloroplast thylakoid membranes of higher plants in situ.

Authors:  K H Suss; C Arkona; R Manteuffel; K Adler
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-15       Impact factor: 11.205

5.  Studies of asymmetry in the three-dimensional structure of lobster D-glyceraldehyde-3-phosphate dehydrogenase.

Authors:  D Moras; K W Olsen; M N Sabesan; M Buehner; G C Ford; M G Rossmann
Journal:  J Biol Chem       Date:  1975-12-10       Impact factor: 5.157

6.  The isolation and crystallization of rabbit skeletal muscle phosphorylase b.

Authors:  E H FISCHER; E G KREBS
Journal:  J Biol Chem       Date:  1958-03       Impact factor: 5.157

7.  Crystal structure of the non-regulatory A(4 )isoform of spinach chloroplast glyceraldehyde-3-phosphate dehydrogenase complexed with NADP.

Authors:  S Fermani; A Ripamonti; P Sabatino; G Zanotti; S Scagliarini; F Sparla; P Trost; P Pupillo
Journal:  J Mol Biol       Date:  2001-11-30       Impact factor: 5.469

8.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 9.  Glutamate synthase: a complex iron-sulfur flavoprotein.

Authors:  M A Vanoni; B Curti
Journal:  Cell Mol Life Sci       Date:  1999-04       Impact factor: 9.261

10.  Cloning and sequencing of the gene encoding spinach ferredoxin-dependent glutamate synthase.

Authors:  B Nalbantoglu; M Hirasawa; C Moomaw; H Nguyen; D B Knaff; R Allen
Journal:  Biochim Biophys Acta       Date:  1994-01-04
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  9 in total

1.  Structure of photosynthetic glyceraldehyde-3-phosphate dehydrogenase (isoform A4) from Arabidopsis thaliana in complex with NAD.

Authors:  Simona Fermani; Francesca Sparla; Lucia Marri; Anton Thumiger; Paolo Pupillo; Giuseppe Falini; Paolo Trost
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-25

2.  Identification, structure determination and analysis of Mycobacterium smegmatis acyl-carrier protein synthase (AcpS) crystallized serendipitously.

Authors:  Indu Bhatia; Savita Yadav; Bichitra K Biswal
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3.  Molecular mechanism of thioredoxin regulation in photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase.

Authors:  S Fermani; F Sparla; G Falini; P L Martelli; R Casadio; P Pupillo; A Ripamonti; P Trost
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-15       Impact factor: 11.205

4.  Conformational changes in redox pairs of protein structures.

Authors:  Samuel W Fan; Richard A George; Naomi L Haworth; Lina L Feng; Jason Y Liu; Merridee A Wouters
Journal:  Protein Sci       Date:  2009-08       Impact factor: 6.725

5.  Co-localization of glyceraldehyde-3-phosphate dehydrogenase with ferredoxin-NADP reductase in pea leaf chloroplasts.

Authors:  Surendra S Negi; Andrew A Carol; Shivangi Pandya; Werner Braun; Louise E Anderson
Journal:  J Struct Biol       Date:  2007-09-08       Impact factor: 2.867

6.  There is a baby in the bath water: AcrB contamination is a major problem in membrane-protein crystallization.

Authors:  David Veesler; Stéphanie Blangy; Christian Cambillau; Giuliano Sciara
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-09-30

7.  Stubborn contaminants: influence of detergents on the purity of the multidrug ABC transporter BmrA.

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Journal:  PLoS One       Date:  2014-12-17       Impact factor: 3.240

8.  Structure of the dihydrolipoamide succinyltransferase catalytic domain from Escherichia coli in a novel crystal form: a tale of a common protein crystallization contaminant.

Authors:  Babak Andi; Alexei S Soares; Wuxian Shi; Martin R Fuchs; Sean McSweeney; Qun Liu
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-08-29       Impact factor: 1.056

9.  Structural snapshots of nitrosoglutathione binding and reactivity underlying S-nitrosylation of photosynthetic GAPDH.

Authors:  Edoardo Jun Mattioli; Jacopo Rossi; Maria Meloni; Marcello De Mia; Christophe H Marchand; Andrea Tagliani; Silvia Fanti; Giuseppe Falini; Paolo Trost; Stéphane D Lemaire; Simona Fermani; Matteo Calvaresi; Mirko Zaffagnini
Journal:  Redox Biol       Date:  2022-06-30       Impact factor: 10.787

  9 in total

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