Literature DB >> 17077138

Evolving research trends in bioinformatics.

Carolina Perez-Iratxeta1, Miguel A Andrade-Navarro, Jonathan D Wren.   

Abstract

The cross-disciplinary nature of bioinformatics entails co-evolution with other biomedical disciplines, whereby some bioinformatics applications become popular in certain disciplines and, in turn, these disciplines influence the focus of future bioinformatics development efforts. We observe here that the growth of computational approaches within various biomedical disciplines is not merely a reflection of a general extended usage of computers and the Internet, but due to the production of useful bioinformatics databases and methods for the rest of the biomedical scientific community. We have used the abstracts stored both in the MEDLINE database of biomedical literature and in NIH-funded project grants, to quantify two effects. First, we examine the biomedical literature as a whole and find that the use of computational methods has become increasingly prevalent across biomedical disciplines over the past three decades, while use of databases and the Internet have been rapidly increasing over the past decade. Second, we study the recent trends in the use of bioinformatics topics. We observe that molecular sequence databases are a widely adopted contribution in biomedicine from the field of bioinformatics, and that microarray analysis is one of the major new topics engaged by the bioinformatics community. Via this analysis, we were able to identify areas of rapid growth in the use of informatics to aid in curriculum planning, development of computational infrastructure and strategies for workforce education and funding.

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Mesh:

Year:  2006        PMID: 17077138     DOI: 10.1093/bib/bbl035

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  16 in total

1.  Towards completion of the Earth's proteome.

Authors:  Carolina Perez-Iratxeta; Gareth Palidwor; Miguel A Andrade-Navarro
Journal:  EMBO Rep       Date:  2007-12       Impact factor: 8.807

2.  Enhancing interdisciplinary mathematics and biology education: a microarray data analysis course bridging these disciplines.

Authors:  Yolande V Tra; Irene M Evans
Journal:  CBE Life Sci Educ       Date:  2010       Impact factor: 3.325

3.  MLTrends: Graphing MEDLINE term usage over time.

Authors:  Gareth A Palidwor; Miguel A Andrade-Navarro
Journal:  J Biomed Discov Collab       Date:  2010-01-25

4.  The Barcode of Life Data Portal: bridging the biodiversity informatics divide for DNA barcoding.

Authors:  Indra Neil Sarkar; Michael Trizna
Journal:  PLoS One       Date:  2011-07-27       Impact factor: 3.240

5.  An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006.

Authors:  John M Lin; Jason W Bohland; Peter Andrews; Gully A P C Burns; Cara B Allen; Partha P Mitra
Journal:  PLoS One       Date:  2008-04-30       Impact factor: 3.240

Review 6.  A survey of scholarly literature describing the field of bioinformatics education and bioinformatics educational research.

Authors:  Alejandra J Magana; Manaz Taleyarkhan; Daniela Rivera Alvarado; Michael Kane; John Springer; Kari Clase
Journal:  CBE Life Sci Educ       Date:  2014       Impact factor: 3.325

7.  Magallanes: a web services discovery and automatic workflow composition tool.

Authors:  Javier Ríos; Johan Karlsson; Oswaldo Trelles
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

8.  MAPI: a software framework for distributed biomedical applications.

Authors:  Johan Karlsson; Oswaldo Trelles
Journal:  J Biomed Semantics       Date:  2013-01-11

9.  Detecting evolution of bioinformatics with a content and co-authorship analysis.

Authors:  Christopher C Yang; Min Song; Xuning Tang
Journal:  Springerplus       Date:  2013-04-26

10.  Rise and demise of bioinformatics? Promise and progress.

Authors:  Christos A Ouzounis
Journal:  PLoS Comput Biol       Date:  2012-04-26       Impact factor: 4.475

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