Literature DB >> 17071976

Selective isolation of large chromosomal regions by transformation-associated recombination cloning for structural and functional analysis of mammalian genomes.

Natalay Kouprina1, Vladimir N Noskov, Vladimir Larionov.   

Abstract

Transformation-associated recombination (TAR) cloning allows selective isolation of full-size genes and genomic loci as circular yeast artificial chromosomes in yeast. The method has a broad application for structural and functional genomics, long-range haplotyping, characterization of chromosomal rearrangements, and evolutionary studies. This chapter describes a basic protocol of gene isolation by TAR, as well as a method of conversion of TAR isolates into bacterial artificial chromosomes.

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Year:  2006        PMID: 17071976     DOI: 10.1385/1-59745-158-4:85

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

1.  Selective isolation of large segments from individual microbial genomes and environmental DNA samples using transformation-associated recombination cloning in yeast.

Authors:  Natalay Kouprina; Vladimir N Noskov; Vladimir Larionov
Journal:  Nat Protoc       Date:  2020-01-31       Impact factor: 13.491

2.  Replication independent formation of extrachromosomal circular DNA in mammalian cell-free system.

Authors:  Zoya Cohen; Sara Lavi
Journal:  PLoS One       Date:  2009-07-01       Impact factor: 3.240

3.  Cloning large natural product gene clusters from the environment: piecing environmental DNA gene clusters back together with TAR.

Authors:  Jeffrey H Kim; Zhiyang Feng; John D Bauer; Dimitris Kallifidas; Paula Y Calle; Sean F Brady
Journal:  Biopolymers       Date:  2010-09       Impact factor: 2.505

4.  Reassembly of functionally intact environmental DNA-derived biosynthetic gene clusters.

Authors:  Dimitris Kallifidas; Sean F Brady
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

5.  Defining synonymous codon compression schemes by genome recoding.

Authors:  Julius Fredens; Simon F Brunner; Samuel H Kim; Kaihang Wang; Tiongsun Chia; Jason W Chin
Journal:  Nature       Date:  2016-10-24       Impact factor: 49.962

6.  Evolutionary diversification of SPANX-N sperm protein gene structure and expression.

Authors:  Natalay Kouprina; Vladimir N Noskov; Adam Pavlicek; N Keith Collins; Pamela D Schoppee Bortz; Chris Ottolenghi; Dmitri Loukinov; Paul Goldsmith; John I Risinger; Jung-Hyun Kim; V Anne Westbrook; Gregory Solomon; Hanna Sounders; John C Herr; Jerzy Jurka; Victor Lobanenkov; David Schlessinger; Vladimir Larionov
Journal:  PLoS One       Date:  2007-04-04       Impact factor: 3.240

7.  Locus specific engineering of tandem DNA repeats in the genome of Saccharomyces cerevisiae using CRISPR/Cas9 and overlapping oligonucleotides.

Authors:  Astrid Lancrey; Alexandra Joubert; Jean-Baptiste Boulé
Journal:  Sci Rep       Date:  2018-05-08       Impact factor: 4.379

Review 8.  Recent Advances in Strategies for the Cloning of Natural Product Biosynthetic Gene Clusters.

Authors:  Wenfang Wang; Guosong Zheng; Yinhua Lu
Journal:  Front Bioeng Biotechnol       Date:  2021-07-13
  8 in total

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