Literature DB >> 17070957

Intron size in mammals: complexity comes to terms with economy.

Uberto Pozzoli1, Giorgia Menozzi, Giacomo P Comi, Rachele Cagliani, Nereo Bresolin, Manuela Sironi.   

Abstract

Different and contrasting models have been proposed to explain intron size evolution in mammals. Here, we demonstrate that intron and intergenic size per se has no adaptive role in gene expression regulation but reflects the need to preserve conserved intronic elements. Although the amount of non-coding functional elements explains the within-genome size variation of intergenic spacers, we show that an additional, additive pressure has been acting on highly expressed introns to reduce the cost of their transcription.

Mesh:

Year:  2006        PMID: 17070957     DOI: 10.1016/j.tig.2006.10.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  18 in total

1.  DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.

Authors:  Tim R Mercer; Stacey L Edwards; Michael B Clark; Shane J Neph; Hao Wang; Andrew B Stergachis; Sam John; Richard Sandstrom; Guoliang Li; Kuljeet S Sandhu; Yijun Ruan; Lars K Nielsen; John S Mattick; John A Stamatoyannopoulos
Journal:  Nat Genet       Date:  2013-06-23       Impact factor: 38.330

2.  Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.

Authors:  Michael F Lin; Pouya Kheradpour; Stefan Washietl; Brian J Parker; Jakob S Pedersen; Manolis Kellis
Journal:  Genome Res       Date:  2011-10-12       Impact factor: 9.043

3.  Both selective and neutral processes drive GC content evolution in the human genome.

Authors:  Uberto Pozzoli; Giorgia Menozzi; Matteo Fumagalli; Matteo Cereda; Giacomo P Comi; Rachele Cagliani; Nereo Bresolin; Manuela Sironi
Journal:  BMC Evol Biol       Date:  2008-03-27       Impact factor: 3.260

4.  The evolution of intron size in amniotes: a role for powered flight?

Authors:  Qu Zhang; Scott V Edwards
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

5.  Transposon-derived and satellite-derived repetitive sequences play distinct functional roles in Mammalian intron size expansion.

Authors:  Dapeng Wang; Yao Su; Xumin Wang; Hongxing Lei; Jun Yu
Journal:  Evol Bioinform Online       Date:  2012-06-19       Impact factor: 1.625

6.  Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns.

Authors:  Manuela Sironi; Giorgia Menozzi; Giacomo P Comi; Matteo Cereda; Rachele Cagliani; Nereo Bresolin; Uberto Pozzoli
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

7.  In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure.

Authors:  Hangxing Yang
Journal:  Biol Direct       Date:  2009-11-21       Impact factor: 4.540

8.  Insight into microRNA regulation by analyzing the characteristics of their targets in humans.

Authors:  Zihua Hu
Journal:  BMC Genomics       Date:  2009-12-10       Impact factor: 3.969

9.  TopHat: discovering splice junctions with RNA-Seq.

Authors:  Cole Trapnell; Lior Pachter; Steven L Salzberg
Journal:  Bioinformatics       Date:  2009-03-16       Impact factor: 6.937

10.  Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin.

Authors:  Pierre Fontanillas; Daniel L Hartl; Max Reuter
Journal:  PLoS Genet       Date:  2007-10-10       Impact factor: 5.917

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