Literature DB >> 17069002

Support vector machine-based feature selection for classification of liver fibrosis grade in chronic hepatitis C.

Zheng Jiang1, Kazunobu Yamauchi, Kentaro Yoshioka, Kazuma Aoki, Susumu Kuroyanagi, Akira Iwata, Jun Yang, Kai Wang.   

Abstract

Although liver biopsy is currently regarded as the gold standard for staging liver fibrosis in chronic hepatitis C, it is a costly invasive procedure and carries a small risk for complication. Our aim in this study was to construct a simple model to distinguish between patients with no or mild fibrosis (METAVIR F0-F1) versus those with clinically significant fibrosis (METAVIR F2-F4). We retrospectively studied 204 consecutive CHC patients. Thirty-four serum markers with age, gender, duration of infection were assessed to classify fibrosis with a classifier known as the support vector machine (SVM). The method of feature selection known as sequential forward floating selection (SFFS) was introduced before the performance of SVM. When four serum markers were extracted with SFFS-SVM, F2-F4 could be predicted accurately in 96%. Our study showed that application of this model could identify CHC patients with clinically significant fibrosis with a high degree of accuracy and may decrease the need for liver biopsy.

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Year:  2006        PMID: 17069002     DOI: 10.1007/s10916-006-9023-2

Source DB:  PubMed          Journal:  J Med Syst        ISSN: 0148-5598            Impact factor:   4.460


  28 in total

Review 1.  Appropriateness of liver biopsy.

Authors:  T Poynard; V Ratziu; P Bedossa
Journal:  Can J Gastroenterol       Date:  2000-06       Impact factor: 3.522

2.  Prediction of protein structural classes by support vector machines.

Authors:  Yu-Dong Cai; Xiao-Jun Liu; Xue-biao Xu; Kuo-Chen Chou
Journal:  Comput Chem       Date:  2002-02

3.  Active learning with support vector machines in the drug discovery process.

Authors:  Manfred K Warmuth; Jun Liao; Gunnar Rätsch; Michael Mathieson; Santosh Putta; Christian Lemmen
Journal:  J Chem Inf Comput Sci       Date:  2003 Mar-Apr

4.  Prediction of liver fibrosis and cirrhosis in chronic hepatitis B infection by serum proteomic fingerprinting: a pilot study.

Authors:  Terence C W Poon; Alex Y Hui; Henry L Y Chan; Irene Ling Ang; Shuk Man Chow; Nathalie Wong; Joseph J Y Sung
Journal:  Clin Chem       Date:  2004-12-08       Impact factor: 8.327

5.  Age and platelet count: a simple index for predicting the presence of histological lesions in patients with antibodies to hepatitis C virus. METAVIR and CLINIVIR Cooperative Study Groups.

Authors:  T Poynard; P Bedossa
Journal:  J Viral Hepat       Date:  1997-05       Impact factor: 3.728

6.  Interobserver study of liver histopathology using the Ishak score in patients with chronic hepatitis C virus infection.

Authors:  J Westin; L M Lagging; R Wejstål; G Norkrans; A P Dhillon
Journal:  Liver       Date:  1999-06

7.  Identification of chronic hepatitis C patients without hepatic fibrosis by a simple predictive model.

Authors:  Xavier Forns; Sergi Ampurdanès; Josep M Llovet; John Aponte; Llorenç Quintó; Eva Martínez-Bauer; Miquel Bruguera; Jose Maria Sánchez-Tapias; Juan Rodés
Journal:  Hepatology       Date:  2002-10       Impact factor: 17.425

8.  Liver fibrosis grade classification with B-mode ultrasound.

Authors:  Wen-Chun Yeh; Sheng-Wen Huang; Pai-Chi Li
Journal:  Ultrasound Med Biol       Date:  2003-09       Impact factor: 2.998

9.  A simple noninvasive index can predict both significant fibrosis and cirrhosis in patients with chronic hepatitis C.

Authors:  Chun-Tao Wai; Joel K Greenson; Robert J Fontana; John D Kalbfleisch; Jorge A Marrero; Hari S Conjeevaram; Anna S-F Lok
Journal:  Hepatology       Date:  2003-08       Impact factor: 17.425

10.  Prediction of cirrhosis in patients with chronic hepatitis C infection by artificial neural network analysis of virus and clinical factors.

Authors:  G H Haydon; R Jalan; M Ala-Korpela; Y Hiltunen; J Hanley; L M Jarvis; C A Ludlum; P C Hayes
Journal:  J Viral Hepat       Date:  1998-07       Impact factor: 3.728

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  1 in total

1.  A critical assessment of feature selection methods for biomarker discovery in clinical proteomics.

Authors:  Christin Christin; Huub C J Hoefsloot; Age K Smilde; B Hoekman; Frank Suits; Rainer Bischoff; Peter Horvatovich
Journal:  Mol Cell Proteomics       Date:  2012-10-31       Impact factor: 5.911

  1 in total

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