Literature DB >> 17066950

[Real-time PCR: approaches to data analysis (a review)].

D V Rebrikov, D Iu Trofimov.   

Abstract

The registration of the accumulation of polymerase chain reaction (PCR) products in the course of amplification (real-time PCR) requires specific equipment, i.e., detecting amplifiers capable of recording the level of fluorescence in the reaction tube during amplicon formation. By the time the reaction is completed, researchers obtain DNA accumulation graphs. The review discusses the most promising algorithms of analysis of real-time PCR curves and possible errors, whether caused by the software used or the operators' mistakes. The data included will assist researchers in understanding the features of the method to obtain more reliable results.

Mesh:

Year:  2006        PMID: 17066950

Source DB:  PubMed          Journal:  Prikl Biokhim Mikrobiol        ISSN: 0555-1099


  10 in total

1.  A new method for quantitative real-time polymerase chain reaction data analysis.

Authors:  Xiayu Rao; Dejian Lai; Xuelin Huang
Journal:  J Comput Biol       Date:  2013-07-10       Impact factor: 1.479

2.  Real-time PCR quantification using a variable reaction efficiency model.

Authors:  Adrian E Platts; Graham D Johnson; Amelia K Linnemann; Stephen A Krawetz
Journal:  Anal Biochem       Date:  2008-06-05       Impact factor: 3.365

3.  Genetic Plasticity and Ethylmalonyl Coenzyme A Pathway during Acetate Assimilation in Rhodospirillum rubrum S1H under Photoheterotrophic Conditions.

Authors:  Quentin De Meur; Adam Deutschbauer; Matthias Koch; Ruddy Wattiez; Baptiste Leroy
Journal:  Appl Environ Microbiol       Date:  2018-01-17       Impact factor: 4.792

4.  An improvement of the 2ˆ(-delta delta CT) method for quantitative real-time polymerase chain reaction data analysis.

Authors:  Xiayu Rao; Xuelin Huang; Zhicheng Zhou; Xin Lin
Journal:  Biostat Bioinforma Biomath       Date:  2013-08

5.  An Optimized Thermal Feedback Methodology for Accurate Temperature Control and High Amplification Efficiency during Fluorescent qPCR.

Authors:  Kangning Wang; Yangyang Jiang; Yu Guo; Mingkun Geng; Wenming Wu
Journal:  Bioengineering (Basel)       Date:  2022-05-28

6.  Competitive reporter monitored amplification (CMA)--quantification of molecular targets by real time monitoring of competitive reporter hybridization.

Authors:  Thomas Ullrich; Eugen Ermantraut; Torsten Schulz; Katrin Steinmetzer
Journal:  PLoS One       Date:  2012-04-23       Impact factor: 3.240

7.  The delta-TF method for real-time PCR data standardization.

Authors:  D Yu Trofimov; D V Rebrikov; G A Samatov; P A Semenov; A B Baluev; E V Goncharova; L P Alexeev; R M Khaitov
Journal:  Dokl Biol Sci       Date:  2008 Mar-Apr

8.  Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae.

Authors:  Marie-Ange Teste; Manon Duquenne; Jean M François; Jean-Luc Parrou
Journal:  BMC Mol Biol       Date:  2009-10-30       Impact factor: 2.946

9.  FMR1 transcript isoforms: association with polyribosomes; regional and developmental expression in mouse brain.

Authors:  David M Brackett; Feng Qing; Paul S Amieux; Drew L Sellers; Philip J Horner; David R Morris
Journal:  PLoS One       Date:  2013-03-07       Impact factor: 3.240

10.  Affine analysis for quantitative PCR measurements.

Authors:  Paul N Patrone; Erica L Romsos; Megan H Cleveland; Peter M Vallone; Anthony J Kearsley
Journal:  Anal Bioanal Chem       Date:  2020-09-20       Impact factor: 4.478

  10 in total

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