Literature DB >> 17060904

Linking publication, gene and protein data.

Paul Kersey1, Rolf Apweiler.   

Abstract

The computational reconstruction of biological systems, 'systems biology', is necessarily dependent on the existence of well-annotated data sets defining and describing the components of these systems, especially genes and the proteins they encode. Information about these components can be accessed either through structured bioinformatics databases, which store basic chemical and functional information abstracted from (or supplementing) the scientific literature, or through the literature itself, which is richer in content but essentially unstructured.

Mesh:

Year:  2006        PMID: 17060904     DOI: 10.1038/ncb1495

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  14 in total

Review 1.  Network integration and graph analysis in mammalian molecular systems biology.

Authors:  A Ma'ayan
Journal:  IET Syst Biol       Date:  2008-09       Impact factor: 1.615

Review 2.  Circadian control of global gene expression patterns.

Authors:  Colleen J Doherty; Steve A Kay
Journal:  Annu Rev Genet       Date:  2010       Impact factor: 16.830

3.  Biomarker discovery in animal health and disease: the application of post-genomic technologies.

Authors:  Rowan E Moore; Jennifer Kirwan; Mary K Doherty; Phillip D Whitfield
Journal:  Biomark Insights       Date:  2007-07-10

4.  Encoding the states of interacting proteins to facilitate biological pathways reconstruction.

Authors:  Alberto Termanini; Paolo Tieri; Claudio Franceschi
Journal:  Biol Direct       Date:  2010-08-13       Impact factor: 4.540

Review 5.  Bioinformatics and molecular modeling in glycobiology.

Authors:  Martin Frank; Siegfried Schloissnig
Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

6.  Systems medicine: the future of medical genomics and healthcare.

Authors:  Charles Auffray; Zhu Chen; Leroy Hood
Journal:  Genome Med       Date:  2009-01-20       Impact factor: 11.117

7.  pubmed2ensembl: a resource for mining the biological literature on genes.

Authors:  Joachim Baran; Martin Gerner; Maximilian Haeussler; Goran Nenadic; Casey M Bergman
Journal:  PLoS One       Date:  2011-09-29       Impact factor: 3.240

8.  Connecting the dots between PubMed abstracts.

Authors:  M Shahriar Hossain; Joseph Gresock; Yvette Edmonds; Richard Helm; Malcolm Potts; Naren Ramakrishnan
Journal:  PLoS One       Date:  2012-01-03       Impact factor: 3.240

9.  Towards bioinformatics assisted infectious disease control.

Authors:  Vitali Sintchenko; Blanca Gallego; Grace Chung; Enrico Coiera
Journal:  BMC Bioinformatics       Date:  2009-02-05       Impact factor: 3.169

10.  Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data.

Authors:  Michael J Gilchrist; Mikkel B Christensen; Richard Harland; Nicolas Pollet; James C Smith; Naoto Ueno; Nancy Papalopulu
Journal:  BMC Bioinformatics       Date:  2008-10-17       Impact factor: 3.169

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