Literature DB >> 17057349

Structure determination of VEGF-E by sulfur SAD.

Armin Wagner1, Michel Pieren, Clemens Schulze-Briese, Kurt Ballmer-Hofer, Andrea E Prota.   

Abstract

The crystal structure of VEGF-E was solved by the sulfur single-wavelength anomalous dispersion method (S-SAD) using highly redundant low-resolution data collected at a wavelength of lambda approximately 1.7 A with an estimated anomalous signal of 1.5%. 11 sulfur sites, nine out of 16 disulfide bonds and two out of 12 methionines could be located in the asymmetric unit using data truncated at a resolution of 4.1 A; however, none of the common diffraction data-quality indicators for SAD allowed clear discrimination between successful and unsuccessful resolution cutoffs. The high solvent content of 75% allowed efficient density modification to be performed and an unbiased electron-density map of good quality to be generated. This study demonstrates the strength of S-SAD for phasing using accurate highly redundant data at low resolution.

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Year:  2006        PMID: 17057349     DOI: 10.1107/S0907444906036742

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  4 in total

1.  Multi-crystal anomalous diffraction for low-resolution macromolecular phasing.

Authors:  Qun Liu; Zhen Zhang; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-12-16

2.  Use of massively multiple merged data for low-resolution S-SAD phasing and refinement of flavivirus NS1.

Authors:  David L Akey; W Clay Brown; Jamie R Konwerski; Craig M Ogata; Janet L Smith
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-27

3.  S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS.

Authors:  Heng Ru; Lixia Zhao; Wei Ding; Lianying Jiao; Neil Shaw; Wenguang Liang; Liguo Zhang; Li-Wei Hung; Naohiro Matsugaki; Soichi Wakatsuki; Zhi-Jie Liu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-04-17

4.  Data collection with a tailored X-ray beam size at 2.69 Å wavelength (4.6 keV): sulfur SAD phasing of Cdc23(Nterm).

Authors:  Michele Cianci; Matthew R Groves; David Barford; Thomas R Schneider
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

  4 in total

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