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Literature DB >> 17056743

Molecular systematics of dictyostelids: 5.8S ribosomal DNA and internal transcribed spacer region analyses.

María Romeralo¹, Ricardo Escalante, Leandro Sastre, Carlos Lado.

Abstract

The variability and adaptability of the amoebae from the class Dictyosteliomycetes greatly complicate their systematics. The nucleotide sequences of the ribosomal internal transcribed spacers and the 5.8S ribosomal DNA gene have been determined for 28 isolates, and their utility to discriminate between different species and genera has been shown.

Entities: Species

Mesh：

Substances：

Year: 2006 PMID： 17056743 PMCID： PMC1800358 DOI： 10.1128/EC.00233-06

Source DB: PubMed Journal: Eukaryot Cell ISSN： 1535-9786

10 in total

Review 1. Ribosomal ITS sequences and plant phylogenetic inference.

Authors: I Alvarez; J F Wendel
Journal: Mol Phylogenet Evol Date: 2003-12 Impact factor: 4.286

2. MView: a web-compatible database search or multiple alignment viewer.

Authors: N P Brown; C Leroy; C Sander
Journal: Bioinformatics Date: 1998 Impact factor: 6.937

3. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors: J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal: Nucleic Acids Res Date: 1997-12-15 Impact factor: 16.971

4. Origin and evolution of the slime molds (Mycetozoa)

Authors: S L Baldauf; W F Doolittle
Journal: Proc Natl Acad Sci U S A Date: 1997-10-28 Impact factor: 11.205

5. The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors: N Saitou; M Nei
Journal: Mol Biol Evol Date: 1987-07 Impact factor: 16.240

6. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors: J D Thompson; D G Higgins; T J Gibson
Journal: Nucleic Acids Res Date: 1994-11-11 Impact factor: 16.971

7. Evolutionary origin of cAMP-based chemoattraction in the social amoebae.

Authors: Elisa Alvarez-Curto; Daniel E Rozen; Allyson V Ritchie; Celine Fouquet; Sandra L Baldauf; Pauline Schaap
Journal: Proc Natl Acad Sci U S A Date: 2005-04-25 Impact factor: 11.205

Review 8. On molecular taxonomy: what is in a name?

Authors: Gerrit Uilenberg; François Thiaucourt; Frans Jongejan
Journal: Exp Appl Acarol Date: 2004 Impact factor: 2.132

Review 9. Consensus phylogeny of Dictyostelium.

Authors: W F Loomis; D W Smith
Journal: Experientia Date: 1995-12-18

10. Molecular phylogeny and evolution of morphology in the social amoebas.

Authors: Pauline Schaap; Thomas Winckler; Michaela Nelson; Elisa Alvarez-Curto; Barrie Elgie; Hiromitsu Hagiwara; James Cavender; Alicia Milano-Curto; Daniel E Rozen; Theodor Dingermann; Rupert Mutzel; Sandra L Baldauf
Journal: Science Date: 2006-10-27 Impact factor: 47.728

10 in total

5 in total

Molecular systematics of dictyostelids: 5.8S ribosomal DNA and internal transcribed spacer region analyses.

Review 1. Ribosomal ITS sequences and plant phylogenetic inference.

2. MView: a web-compatible database search or multiple alignment viewer.

3. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

4. Origin and evolution of the slime molds (Mycetozoa)

5. The neighbor-joining method: a new method for reconstructing phylogenetic trees.

6. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

7. Evolutionary origin of cAMP-based chemoattraction in the social amoebae.

Review 8. On molecular taxonomy: what is in a name?

Review 9. Consensus phylogeny of Dictyostelium.

10. Molecular phylogeny and evolution of morphology in the social amoebas.

1. Social amoebae: environmental factors influencing their distribution and diversity across south-western Europe.

2. An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns.

3. Kin discrimination and possible cryptic species in the social amoeba Polysphondylium violaceum.

4. A well supported multi gene phylogeny of 52 dictyostelia.

5. Did terrestrial diversification of amoebas (amoebozoa) occur in synchrony with land plants?