Literature DB >> 17055251

Whole-genome re-sequencing.

David R Bentley1.   

Abstract

DNA sequencing can be used to gain important information on genes, genetic variation and gene function for biological and medical studies. The growing collection of publicly available reference genome sequences will underpin a new era of whole genome re-sequencing, but sequencing costs need to fall and throughput needs to rise by several orders of magnitude. Novel technologies are being developed to meet this need by generating massive amounts of sequence that can be aligned to the reference sequence. The challenge is to maintain the high standards of accuracy and completeness that are hallmarks of the previous genome projects. One or more new sequencing technologies are expected to become the mainstay of future research, and to make DNA sequencing centre stage as a routine tool in genetic research in the coming years.

Mesh:

Year:  2006        PMID: 17055251     DOI: 10.1016/j.gde.2006.10.009

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  264 in total

1.  Consistent annotation of gene expression arrays.

Authors:  Benoît Ballester; Nathan Johnson; Glenn Proctor; Paul Flicek
Journal:  BMC Genomics       Date:  2010-05-11       Impact factor: 3.969

2.  Enhancing radiation hybrid mapping through whole genome amplification.

Authors:  Genesio M Karere; Leslie A Lyons; Lutz Froenicke
Journal:  Hereditas       Date:  2010-04       Impact factor: 3.271

Review 3.  Metagenomic analyses: past and future trends.

Authors:  Carola Simon; Rolf Daniel
Journal:  Appl Environ Microbiol       Date:  2010-12-17       Impact factor: 4.792

Review 4.  The next-generation sequencing technology and application.

Authors:  Xiaoguang Zhou; Lufeng Ren; Qingshu Meng; Yuntao Li; Yude Yu; Jun Yu
Journal:  Protein Cell       Date:  2010-07-07       Impact factor: 14.870

5.  Rapid construction of empirical RNA fitness landscapes.

Authors:  Jason N Pitt; Adrian R Ferré-D'Amaré
Journal:  Science       Date:  2010-10-15       Impact factor: 47.728

6.  Mosaic graphs and comparative genomics in phage communities.

Authors:  Mahdi Belcaid; Anne Bergeron; Guylaine Poisson
Journal:  J Comput Biol       Date:  2010-09       Impact factor: 1.479

7.  Nanopore DNA sequencing with MspA.

Authors:  Ian M Derrington; Tom Z Butler; Marcus D Collins; Elizabeth Manrao; Mikhail Pavlenok; Michael Niederweis; Jens H Gundlach
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-26       Impact factor: 11.205

Review 8.  Suppression Subtractive Hybridization Versus Next-Generation Sequencing in Plant Genetic Engineering: Challenges and Perspectives.

Authors:  Mahbod Sahebi; Mohamed M Hanafi; Parisa Azizi; Abdul Hakim; Sadegh Ashkani; Rambod Abiri
Journal:  Mol Biotechnol       Date:  2015-10       Impact factor: 2.695

9.  Genome-wide linkage analysis is a powerful prenatal diagnostic tool in families with unknown genetic defects.

Authors:  Maria Arélin; Bernt Schulze; Bertram Müller-Myhsok; Denise Horn; Alexander Diers; Birgit Uhlenberg; Peter Nürnberg; Gudrun Nürnberg; Christian Becker; Stefan Mundlos; Tom H Lindner; Karl Sperling; Katrin Hoffmann
Journal:  Eur J Hum Genet       Date:  2012-10-03       Impact factor: 4.246

10.  MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.

Authors:  Todd J Treangen; Sergey Koren; Daniel D Sommer; Bo Liu; Irina Astrovskaya; Brian Ondov; Aaron E Darling; Adam M Phillippy; Mihai Pop
Journal:  Genome Biol       Date:  2013-01-15       Impact factor: 13.583

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