Literature DB >> 17055246

Functional variation and evolution of non-coding DNA.

Christine P Bird1, Barbara E Stranger, Emmanouil T Dermitzakis.   

Abstract

The focus of large genomic studies has shifted from only looking at genes and protein-coding sequences to exploring the full set of elements in each genome. The explosion of comparative sequencing data has led to an increase in methodologies, approaches and ideas on how to analyze the unknown fraction of the genome, namely the non-protein-coding fraction. The main issues relate to the discovery, evolutionary analysis and natural variation of non-coding DNA, and the parameters that prevent us from fully understanding the properties of non-coding DNA.

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Year:  2006        PMID: 17055246     DOI: 10.1016/j.gde.2006.10.003

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  23 in total

Review 1.  Coordination of leaf development via regulation of KNOX1 genes.

Authors:  Naoyuki Uchida; Seisuke Kimura; Daniel Koenig; Neelima Sinha
Journal:  J Plant Res       Date:  2009-06-09       Impact factor: 2.629

2.  Genome-wide identification of conserved regulatory function in diverged sequences.

Authors:  Leila Taher; David M McGaughey; Samantha Maragh; Ivy Aneas; Seneca L Bessling; Webb Miller; Marcelo A Nobrega; Andrew S McCallion; Ivan Ovcharenko
Journal:  Genome Res       Date:  2011-05-31       Impact factor: 9.043

3.  Using zebrafish to study skeletal genomics.

Authors:  Ronald Y Kwon; Claire J Watson; David Karasik
Journal:  Bone       Date:  2019-02-11       Impact factor: 4.398

4.  Unravelling cis-regulatory elements in the genome of the smallest photosynthetic eukaryote: phylogenetic footprinting in Ostreococcus.

Authors:  Gwenael Piganeau; Klaas Vandepoele; Sébastien Gourbière; Yves Van de Peer; Hervé Moreau
Journal:  J Mol Evol       Date:  2009-08-20       Impact factor: 2.395

5.  Regulation of SHOOT MERISTEMLESS genes via an upstream-conserved noncoding sequence coordinates leaf development.

Authors:  Naoyuki Uchida; Brad Townsley; Kook-Hyun Chung; Neelima Sinha
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-26       Impact factor: 11.205

6.  Comparative genomic sequence and expression analyses of Medicago truncatula and alfalfa subspecies falcata COLD-ACCLIMATION-SPECIFIC genes.

Authors:  Joyce C Pennycooke; Hongmei Cheng; Eric J Stockinger
Journal:  Plant Physiol       Date:  2008-01-24       Impact factor: 8.340

7.  Genome-wide analysis of conservation and divergence of microsatellites in rice.

Authors:  Manish Roorkiwal; Atul Grover; Prakash C Sharma
Journal:  Mol Genet Genomics       Date:  2009-05-30       Impact factor: 3.291

8.  A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing.

Authors:  Rodger B Voelker; J Andrew Berglund
Journal:  Genome Res       Date:  2007-05-24       Impact factor: 9.043

Review 9.  Genomics and successful aging: grounds for renewed optimism?

Authors:  L C Pilling; L W Harries; J Powell; D J Llewellyn; L Ferrucci; D Melzer
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2012-03-27       Impact factor: 6.053

10.  Tissue-specific transcriptional regulation has diverged significantly between human and mouse.

Authors:  Duncan T Odom; Robin D Dowell; Elizabeth S Jacobsen; William Gordon; Timothy W Danford; Kenzie D MacIsaac; P Alexander Rolfe; Caitlin M Conboy; David K Gifford; Ernest Fraenkel
Journal:  Nat Genet       Date:  2007-05-21       Impact factor: 38.330

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