Literature DB >> 17054983

Reconstruction of functional beta-propeller lectins via homo-oligomeric assembly of shorter fragments.

Itamar Yadid1, Dan S Tawfik.   

Abstract

The modular nature of protein folds suggests that present day proteins evolved via duplication and recombination of smaller functional elements. However, the reconstruction of these putative evolutionary pathways after many millions of years of evolutionary drift has thus far proven difficult, with all attempts to date failing to produce a functional protein. Tachylecin-2 is a monomeric 236 amino acid, five-bladed beta-propeller with five sugar-binding sites. This protein was isolated from a horseshoe crab that emerged ca 500 million years ago. The modular, yet ancient, nature of Tachylectin-2 makes it an excellent model for exploring the evolution of proteins from smaller subunits. To this end, we generated genetically diverse libraries by incremental truncation of the Tachylectin-2 gene and screened them for functional lectins. A number of approximately 100 amino acid residue segments were isolated with the ability to assemble into active homo-pentamers. The topology of most of these segments follows a "hidden" module that differs from the modules observed in wild-type Tachylectin-2, yet their biophysical properties and sugar binding activities resemble the wild-type's. Since the pentamer's molecular mass is twofold higher than the wild-type (approximately 500 amino acid residues), the structure of these oligomeric forms is likely to also differ. Our laboratory evolution experiments highlight the versatility and modularity of the beta-propeller fold, while substantiating the hypothesis that proteins with high internal symmetry, such as beta-propellers, evolved from short, functional gene segments that, at later stages, duplicated, fused, and rearranged, to yield the folds we recognise today.

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Year:  2006        PMID: 17054983     DOI: 10.1016/j.jmb.2006.09.055

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  22 in total

1.  Metamorphic proteins mediate evolutionary transitions of structure.

Authors:  Itamar Yadid; Noam Kirshenbaum; Michal Sharon; Orly Dym; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

2.  Experimental support for the evolution of symmetric protein architecture from a simple peptide motif.

Authors:  Jihun Lee; Michael Blaber
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-20       Impact factor: 11.205

3.  Evolution of a protein folding nucleus.

Authors:  Xue Xia; Liam M Longo; Mason A Sutherland; Michael Blaber
Journal:  Protein Sci       Date:  2015-12-10       Impact factor: 6.725

4.  Artificial domain duplication replicates evolutionary history of ketol-acid reductoisomerases.

Authors:  Jackson K B Cahn; Sabine Brinkmann-Chen; Andrew R Buller; Frances H Arnold
Journal:  Protein Sci       Date:  2015-12-21       Impact factor: 6.725

5.  Characterization of DLP12 Prophage Membrane Associated Protein: HolinGFP.

Authors:  K V Srividhya; S Krishnaswamy
Journal:  Indian J Microbiol       Date:  2012-06-28       Impact factor: 2.461

6.  Establishing wild-type levels of catalytic activity on natural and artificial (beta alpha)8-barrel protein scaffolds.

Authors:  Jörg Claren; Christoph Malisi; Birte Höcker; Reinhard Sterner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

Review 7.  Emergence of symmetric protein architecture from a simple peptide motif: evolutionary models.

Authors:  Michael Blaber; Jihun Lee; Liam Longo
Journal:  Cell Mol Life Sci       Date:  2012-07-13       Impact factor: 9.261

8.  Computational design of a self-assembling symmetrical β-propeller protein.

Authors:  Arnout R D Voet; Hiroki Noguchi; Christine Addy; David Simoncini; Daiki Terada; Satoru Unzai; Sam-Yong Park; Kam Y J Zhang; Jeremy R H Tame
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

9.  Ab initio folding of a trefoil-fold motif reveals structural similarity with a β-propeller blade motif.

Authors:  Connie A Tenorio; Liam M Longo; Joseph B Parker; Jihun Lee; Michael Blaber
Journal:  Protein Sci       Date:  2020-03-25       Impact factor: 6.725

10.  A novel human tectonin protein with multivalent beta-propeller folds interacts with ficolin and binds bacterial LPS.

Authors:  Diana Hooi Ping Low; Zhiwei Ang; Quan Yuan; Vladimir Frecer; Bow Ho; Jianzhu Chen; Jeak Ling Ding
Journal:  PLoS One       Date:  2009-07-16       Impact factor: 3.240

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