Literature DB >> 17050570

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.

Ivica Letunic1, Peer Bork.   

Abstract

UNLABELLED: Interactive Tree Of Life (iTOL) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. Trees can be interactively pruned and re-rooted. Various types of data such as genome sizes or protein domain repertoires can be mapped onto the tree. Export to several bitmap and vector graphics formats is supported. AVAILABILITY: iTOL is available at http://itol.embl.de

Mesh：

Year:  2006        PMID： 17050570     DOI： 10.1093/bioinformatics/btl529

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  1119 in total

1.  Association of Campylobacter jejuni metabolic traits with multilocus sequence types.

Authors:  Caroline P A de Haan; Ann-Katrin Llarena; Joana Revez; Marja-Liisa Hänninen
Journal:  Appl Environ Microbiol       Date:  2012-06-01       Impact factor: 4.792

2.  Analysis of the community structure of abyssal kinetoplastids revealed similar communities at larger spatial scales.

Authors:  Faezeh Shah Salani; Hartmut Arndt; Klaus Hausmann; Frank Nitsche; Frank Scheckenbach
Journal:  ISME J       Date:  2011-11-10       Impact factor: 10.302

3.  Metatranscriptomic analysis of microbes in an Oceanfront deep-subsurface hot spring reveals novel small RNAs and type-specific tRNA degradation.

Authors:  Shinnosuke Murakami; Kosuke Fujishima; Masaru Tomita; Akio Kanai
Journal:  Appl Environ Microbiol       Date:  2011-12-09       Impact factor: 4.792

4.  Characterization of biphenyl dioxygenase sequences and activities encoded by the metagenomes of highly polychlorobiphenyl-contaminated soils.

Authors:  Christine Standfuss-Gabisch; Djamila Al-Halbouni; Bernd Hofer
Journal:  Appl Environ Microbiol       Date:  2012-02-10       Impact factor: 4.792

Review 5.  The R-spondin protein family.

Authors:  Wim B M de Lau; Berend Snel; Hans C Clevers
Journal:  Genome Biol       Date:  2012       Impact factor: 13.583

6.  Mesocosms of aquatic bacterial communities from the Cuatro Cienegas Basin (Mexico): a tool to test bacterial community response to environmental stress.

Authors:  Silvia Pajares; German Bonilla-Rosso; Michael Travisano; Luis E Eguiarte; Valeria Souza
Journal:  Microb Ecol       Date:  2012-03-30       Impact factor: 4.552

7.  Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea.

Authors:  Jay McCarren; Jamie W Becker; Daniel J Repeta; Yanmei Shi; Curtis R Young; Rex R Malmstrom; Sallie W Chisholm; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-31       Impact factor: 11.205

Review 8.  Nanos genes and their role in development and beyond.

Authors:  Evi De Keuckelaere; Paco Hulpiau; Yvan Saeys; Geert Berx; Frans van Roy
Journal:  Cell Mol Life Sci       Date:  2018-02-03       Impact factor: 9.261

9.  Identification and structural characterization of a histidinol phosphate phosphatase from Mycobacterium tuberculosis.

Authors:  Bhavya Jha; Deepak Kumar; Arun Sharma; Abhisek Dwivedy; Ramandeep Singh; Bichitra Kumar Biswal
Journal:  J Biol Chem       Date:  2018-05-11       Impact factor: 5.157

10.  Rumen methanogenic genotypes differ in abundance according to host residual feed intake phenotype and diet type.

Authors:  Ciara A Carberry; Sinéad M Waters; Sinead M Waters; David A Kenny; Christopher J Creevey
Journal:  Appl Environ Microbiol       Date:  2013-11-08       Impact factor: 4.792
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