Literature DB >> 17050007

Proteomics of the peroxisome.

R A Saleem1, J J Smith, J D Aitchison.   

Abstract

Genomes provide us with a blue print for the potential of a cell. However, the activity of a cell is expressed in its proteome. Full understanding of the complexity of cells demands a comprehensive view of the proteome; its interactions, activity states and organization. Comprehensive proteomic approaches applied to peroxisomes have yielded new insights into the organelle and its dynamic interplay with other cellular structures. As technologies and methodologies improve, proteomics hold the promise for new discoveries of peroxisome function and a full description of this dynamic organelle.

Mesh:

Year:  2006        PMID: 17050007      PMCID: PMC1858641          DOI: 10.1016/j.bbamcr.2006.09.005

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  71 in total

1.  RNA and RNA binding proteins participate in early stages of cell spreading through spreading initiation centers.

Authors:  Carmen L de Hoog; Leonard J Foster; Matthias Mann
Journal:  Cell       Date:  2004-05-28       Impact factor: 41.582

2.  Specification of the peroxisome targeting signals type 1 and type 2 of plant peroxisomes by bioinformatics analyses.

Authors:  Sigrun Reumann
Journal:  Plant Physiol       Date:  2004-06       Impact factor: 8.340

3.  A proteome-wide approach identifies sumoylated substrate proteins in yeast.

Authors:  Vikram Govind Panse; Ulrike Hardeland; Thilo Werner; Bernhard Kuster; Ed Hurt
Journal:  J Biol Chem       Date:  2004-07-30       Impact factor: 5.157

4.  AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes.

Authors:  Sigrun Reumann; Changle Ma; Steffen Lemke; Lavanya Babujee
Journal:  Plant Physiol       Date:  2004-08-27       Impact factor: 8.340

5.  Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research.

Authors:  Patrick A Everley; Jeroen Krijgsveld; Bruce R Zetter; Steven P Gygi
Journal:  Mol Cell Proteomics       Date:  2004-04-21       Impact factor: 5.911

6.  Microsomal aldehyde dehydrogenase or its cross-reacting protein exists in outer mitochondrial membranes and peroxisomal membranes in rat liver.

Authors:  K Miyauchi; A Yamamoto; R Masaki; Y Fujiki; Y Tashiro
Journal:  Cell Struct Funct       Date:  1993-12       Impact factor: 2.212

7.  Domain architecture and activity of human Pex19p, a chaperone-like protein for intracellular trafficking of peroxisomal membrane proteins.

Authors:  Hiroyuki Shibata; Yoshinori Kashiwayama; Tsuneo Imanaka; Hiroaki Kato
Journal:  J Biol Chem       Date:  2004-07-12       Impact factor: 5.157

8.  Identification of a peroxisomal targeting signal at the carboxy terminus of firefly luciferase.

Authors:  S G Gould; G A Keller; S Subramani
Journal:  J Cell Biol       Date:  1987-12       Impact factor: 10.539

9.  PEX12 interacts with PEX5 and PEX10 and acts downstream of receptor docking in peroxisomal matrix protein import.

Authors:  C C Chang; D S Warren; K A Sacksteder; S J Gould
Journal:  J Cell Biol       Date:  1999-11-15       Impact factor: 10.539

10.  PEX3 functions as a PEX19 docking factor in the import of class I peroxisomal membrane proteins.

Authors:  Yi Fang; James C Morrell; Jacob M Jones; Stephen J Gould
Journal:  J Cell Biol       Date:  2004-03-08       Impact factor: 10.539

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  13 in total

1.  Peroxisome biogenesis and function.

Authors:  Navneet Kaur; Sigrun Reumann; Jianping Hu
Journal:  Arabidopsis Book       Date:  2009-09-11

2.  Comprehensive proteomics analysis of glycosomes from Leishmania donovani.

Authors:  Mahendra D Jamdhade; Harsh Pawar; Sandip Chavan; Gajanan Sathe; P K Umasankar; Kiran N Mahale; Tanwi Dixit; Anil K Madugundu; T S Keshava Prasad; Harsha Gowda; Akhilesh Pandey; Milind S Patole
Journal:  OMICS       Date:  2015-03

3.  Integrated phosphoproteomics analysis of a signaling network governing nutrient response and peroxisome induction.

Authors:  Ramsey A Saleem; Richard S Rogers; Alexander V Ratushny; David J Dilworth; Paul T Shannon; David Shteynberg; Yakun Wan; Robert L Moritz; Alexey I Nesvizhskii; Richard A Rachubinski; John D Aitchison
Journal:  Mol Cell Proteomics       Date:  2010-04-15       Impact factor: 5.911

4.  Redox-regulated cargo binding and release by the peroxisomal targeting signal receptor, Pex5.

Authors:  Changle Ma; Danielle Hagstrom; Soumi Guha Polley; Suresh Subramani
Journal:  J Biol Chem       Date:  2013-07-31       Impact factor: 5.157

5.  PPARα activation induces N(ε)-Lys-acetylation of rat liver peroxisomal multifunctional enzyme type 1.

Authors:  Miguel A Contreras; Oscar Alzate; Avtar K Singh; Inderjit Singh
Journal:  Lipids       Date:  2013-10-05       Impact factor: 1.880

6.  Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms.

Authors:  Sigrun Reumann; Lavanya Babujee; Changle Ma; Stephanie Wienkoop; Tanja Siemsen; Gerardo E Antonicelli; Nicolas Rasche; Franziska Lüder; Wolfram Weckwerth; Olaf Jahn
Journal:  Plant Cell       Date:  2007-10-19       Impact factor: 11.277

7.  Genome-wide analysis of effectors of peroxisome biogenesis.

Authors:  Ramsey A Saleem; Rose Long-O'Donnell; David J Dilworth; Abraham M Armstrong; Arvind P Jamakhandi; Yakun Wan; Theo A Knijnenburg; Antti Niemistö; John Boyle; Richard A Rachubinski; Ilya Shmulevich; John D Aitchison
Journal:  PLoS One       Date:  2010-08-04       Impact factor: 3.240

8.  In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes.

Authors:  Sigrun Reumann; Sheng Quan; Kyaw Aung; Pingfang Yang; Kalpana Manandhar-Shrestha; Danielle Holbrook; Nicole Linka; Robert Switzenberg; Curtis G Wilkerson; Andreas P M Weber; Laura J Olsen; Jianping Hu
Journal:  Plant Physiol       Date:  2009-03-27       Impact factor: 8.340

9.  Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes.

Authors:  Holger Eubel; Etienne H Meyer; Nicolas L Taylor; John D Bussell; Nicholas O'Toole; Joshua L Heazlewood; Ian Castleden; Ian D Small; Steven M Smith; A Harvey Millar
Journal:  Plant Physiol       Date:  2008-10-17       Impact factor: 8.340

10.  The peroxisome: still a mysterious organelle.

Authors:  Michael Schrader; H Dariush Fahimi
Journal:  Histochem Cell Biol       Date:  2008-02-15       Impact factor: 4.304

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