Literature DB >> 17049838

High-throughput screening for enhanced protein stability.

Andreas S Bommarius1, James M Broering, Javier F Chaparro-Riggers, Karen M Polizzi.   

Abstract

High thermostability of proteins is a prerequisite for their implementation in biocatalytic processes and in the evolution of new functions. Various protein engineering methods have been applied to the evolution of increased thermostability, including the use of combinatorial design where a diverse library of proteins is generated and screened for variants with increased stability. Current trends are toward the use of data-driven methods that reduce the library size by using available data to choose areas of the protein to target, without specifying the precise changes. For example, the half-lives of subtilisin and a Bacillus subtilis lipase were increased 1500-fold and 300-fold, respectively, using a crystal structure to guide mutagenesis choices. Sequence homology based methods have also produced libraries where 50% of the variants have improved thermostability. Moreover, advances in the high-throughput measurement of denaturation curves and the application of selection methods to thermostability evolution have enabled the screening of larger libraries. The combination of these methods will lead to the rapid improvement of protein stability for biotechnological purposes.

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Year:  2006        PMID: 17049838     DOI: 10.1016/j.copbio.2006.10.001

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  21 in total

1.  Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59.

Authors:  Olga Khersonsky; Gert Kiss; Daniela Röthlisberger; Orly Dym; Shira Albeck; Kendall N Houk; David Baker; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-08       Impact factor: 11.205

Review 2.  Protein stability by number: high-throughput and statistical approaches to one of protein science's most difficult problems.

Authors:  Thomas J Magliery; Jason J Lavinder; Brandon J Sullivan
Journal:  Curr Opin Chem Biol       Date:  2011-04-15       Impact factor: 8.822

3.  Bioinformatic method for protein thermal stabilization by structural entropy optimization.

Authors:  Euiyoung Bae; Ryan M Bannen; George N Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-08       Impact factor: 11.205

4.  Insertion of endocellulase catalytic domains into thermostable consensus ankyrin scaffolds: effects on stability and cellulolytic activity.

Authors:  Eva S Cunha; Christine L Hatem; Doug Barrick
Journal:  Appl Environ Microbiol       Date:  2013-08-23       Impact factor: 4.792

5.  Coevolution of both Thermostability and Activity of Polyphosphate Glucokinase from Thermobifida fusca YX.

Authors:  Wei Zhou; Rui Huang; Zhiguang Zhu; Yi-Heng P Job Zhang
Journal:  Appl Environ Microbiol       Date:  2018-08-01       Impact factor: 4.792

6.  A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function.

Authors:  Carlos L Araya; Douglas M Fowler; Wentao Chen; Ike Muniez; Jeffery W Kelly; Stanley Fields
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-03       Impact factor: 11.205

7.  Thermoadaptation-directed enzyme evolution in an error-prone thermophile derived from Geobacillus kaustophilus HTA426.

Authors:  Hirokazu Suzuki; Jyumpei Kobayashi; Keisuke Wada; Megumi Furukawa; Katsumi Doi
Journal:  Appl Environ Microbiol       Date:  2014-10-17       Impact factor: 4.792

8.  Evolving thermostability in mutant libraries of ligninolytic oxidoreductases expressed in yeast.

Authors:  Eva García-Ruiz; Diana Maté; Antonio Ballesteros; Angel T Martinez; Miguel Alcalde
Journal:  Microb Cell Fact       Date:  2010-03-18       Impact factor: 5.328

9.  Understanding structural features of microbial lipases--an overview.

Authors:  John Geraldine Sandana Mala; Satoru Takeuchi
Journal:  Anal Chem Insights       Date:  2008-03-27

10.  Predicting protein thermostability changes from sequence upon multiple mutations.

Authors:  Ludovica Montanucci; Piero Fariselli; Pier Luigi Martelli; Rita Casadio
Journal:  Bioinformatics       Date:  2008-07-01       Impact factor: 6.937

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