Literature DB >> 17048390

Spatio-temporal analysis of constitutive exocytosis in epithelial cells.

Rafael Sebastian1, María-Elena Diaz, Guillermo Ayala, Kresimir Letinic, Jose Moncho-Bogani, Derek Toomre.   

Abstract

Exocytosis is an essential cellular trafficking process integral to the proper distribution and function of a plethora of molecules, including transporters, receptors, and enzymes. Moreover, incorrect protein targeting can lead to pathological conditions. Recently, the application of evanescent wave microscopy has allowed us to image the final steps of exocytosis. However, spatio-temporal analysis of fusion of constitutive vesicular traffic with the plasma membrane has not been systematically performed. Also, the spatial sites and times of vesicle fusion have not yet been analyzed together. In addition, more formal tests are required in testing biological hypotheses, rather than visual inspection combined with statistical descriptives. Ripley K-functions are used to examine the joint and marginal behavior of locations and fusion times. Semiautomatic detection and mapping of constitutive fusion sites reveals spatial and temporal clustering, but no dependency between the locations and times of fusion events. Our novel approach could be translated to other studies of membrane trafficking in health and diseases such as diabetes.

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Year:  2006        PMID: 17048390     DOI: 10.1109/TCBB.2006.11

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  10 in total

1.  Deciphering subcellular processes in live imaging datasets via dynamic probabilistic networks.

Authors:  Kresimir Letinic; Rafael Sebastian; Andrew Barthel; Derek Toomre
Journal:  Bioinformatics       Date:  2010-06-26       Impact factor: 6.937

2.  Exocyst is involved in polarized cell migration and cerebral cortical development.

Authors:  Kresimir Letinic; Rafael Sebastian; Derek Toomre; Pasko Rakic
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-19       Impact factor: 11.205

3.  Spatiotemporal detection and analysis of exocytosis reveal fusion "hotspots" organized by the cytoskeleton in endocrine cells.

Authors:  Tianyi Yuan; Jingze Lu; Jinzhong Zhang; Yongdeng Zhang; Liangyi Chen
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

4.  Synaptotagmin oligomerization is essential for calcium control of regulated exocytosis.

Authors:  Oscar D Bello; Ouardane Jouannot; Arunima Chaudhuri; Ekaterina Stroeva; Jeff Coleman; Kirill E Volynski; James E Rothman; Shyam S Krishnakumar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

5.  Point process models for localization and interdependence of punctate cellular structures.

Authors:  Ying Li; Timothy D Majarian; Armaghan W Naik; Gregory R Johnson; Robert F Murphy
Journal:  Cytometry A       Date:  2016-06-21       Impact factor: 4.355

6.  Interactive, computer-assisted tracking of speckle trajectories in fluorescence microscopy: application to actin polymerization and membrane fusion.

Authors:  Matthew B Smith; Erdem Karatekin; Andrea Gohlke; Hiroaki Mizuno; Naoki Watanabe; Dimitrios Vavylonis
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

7.  A patch-based method for repetitive and transient event detection in fluorescence imaging.

Authors:  Jérôme Boulanger; Alexandre Gidon; Charles Kervran; Jean Salamero
Journal:  PLoS One       Date:  2010-10-15       Impact factor: 3.240

8.  Spatiotemporal organization of exocytosis emerges during neuronal shape change.

Authors:  Fabio L Urbina; Shawn M Gomez; Stephanie L Gupton
Journal:  J Cell Biol       Date:  2018-01-19       Impact factor: 10.539

9.  Novel ecto-tagged integrins reveal their trafficking in live cells.

Authors:  Clotilde Huet-Calderwood; Felix Rivera-Molina; Daniel V Iwamoto; Emil B Kromann; Derek Toomre; David A Calderwood
Journal:  Nat Commun       Date:  2017-09-18       Impact factor: 14.919

10.  PRRT2 Regulates Synaptic Fusion by Directly Modulating SNARE Complex Assembly.

Authors:  Jeff Coleman; Ouardane Jouannot; Sathish K Ramakrishnan; Maria N Zanetti; Jing Wang; Vincenzo Salpietro; Henry Houlden; James E Rothman; Shyam S Krishnakumar
Journal:  Cell Rep       Date:  2018-01-16       Impact factor: 9.423

  10 in total

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