Literature DB >> 17045684

Text mining and its potential applications in systems biology.

Sophia Ananiadou1, Douglas B Kell, Jun-ichi Tsujii.   

Abstract

With biomedical literature increasing at a rate of several thousand papers per week, it is impossible to keep abreast of all developments; therefore, automated means to manage the information overload are required. Text mining techniques, which involve the processes of information retrieval, information extraction and data mining, provide a means of solving this. By adding meaning to text, these techniques produce a more structured analysis of textual knowledge than simple word searches, and can provide powerful tools for the production and analysis of systems biology models.

Mesh:

Year:  2006        PMID: 17045684     DOI: 10.1016/j.tibtech.2006.10.002

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  90 in total

1.  KID--an algorithm for fast and efficient text mining used to automatically generate a database containing kinetic information of enzymes.

Authors:  Stephanie Heinen; Bernhard Thielen; Dietmar Schomburg
Journal:  BMC Bioinformatics       Date:  2010-07-13       Impact factor: 3.169

2.  Mining MEDLINE for the treatment of osteoporosis.

Authors:  Pinar Yildirim; Cinar Ceken; Reza Hassanpour; Sadik Esmelioglu; Mehmet Resit Tolun
Journal:  J Med Syst       Date:  2011-04-15       Impact factor: 4.460

Review 3.  Frontiers of biomedical text mining: current progress.

Authors:  Pierre Zweigenbaum; Dina Demner-Fushman; Hong Yu; Kevin B Cohen
Journal:  Brief Bioinform       Date:  2007-10-30       Impact factor: 11.622

Review 4.  Designing and encoding models for synthetic biology.

Authors:  Lukas Endler; Nicolas Rodriguez; Nick Juty; Vijayalakshmi Chelliah; Camille Laibe; Chen Li; Nicolas Le Novère
Journal:  J R Soc Interface       Date:  2009-04-01       Impact factor: 4.118

5.  Development of a Google-based search engine for data mining radiology reports.

Authors:  Joseph P Erinjeri; Daniel Picus; Fred W Prior; David A Rubin; Paul Koppel
Journal:  J Digit Imaging       Date:  2008-04-05       Impact factor: 4.056

Review 6.  Novel opportunities for computational biology and sociology in drug discovery.

Authors:  Lixia Yao; James A Evans; Andrey Rzhetsky
Journal:  Trends Biotechnol       Date:  2010-04       Impact factor: 19.536

7.  U-Compare: share and compare text mining tools with UIMA.

Authors:  Yoshinobu Kano; William A Baumgartner; Luke McCrohon; Sophia Ananiadou; K Bretonnel Cohen; Lawrence Hunter; Jun'ichi Tsujii
Journal:  Bioinformatics       Date:  2009-05-04       Impact factor: 6.937

8.  PathText: a text mining integrator for biological pathway visualizations.

Authors:  Brian Kemper; Takuya Matsuzaki; Yukiko Matsuoka; Yoshimasa Tsuruoka; Hiroaki Kitano; Sophia Ananiadou; Jun'ichi Tsujii
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

9.  Construction of an annotated corpus to support biomedical information extraction.

Authors:  Paul Thompson; Syed A Iqbal; John McNaught; Sophia Ananiadou
Journal:  BMC Bioinformatics       Date:  2009-10-23       Impact factor: 3.169

10.  PPI finder: a mining tool for human protein-protein interactions.

Authors:  Min He; Yi Wang; Wei Li
Journal:  PLoS One       Date:  2009-02-23       Impact factor: 3.240

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