Literature DB >> 17044710

Glycine at the pyrite-water interface: the role of surface defects.

Nisanth N Nair1, Eduard Schreiner, Dominik Marx.   

Abstract

Ab initio molecular dynamics simulations were performed in order to study chemisorption, electronic properties, and desorption of glycine at wet pyrite surfaces focusing on the role of surface point defects. The change in the electronic structure and its influence on the chemical reactivity of the free FeS(2)(100) surface due to sulfur vacancies was studied in detail yielding several adsorption modes of glycine and water molecules. Energetically preferred adsorption modes were furthermore investigated in the presence of hot pressurized water mimicking "Iron Sulfur World" prebiotic conditions. The metadynamics Car-Parrinello technique was employed to map the free energy landscape including paths and barriers for desorption of glycine from such wet defective surfaces. The ubiquitous sulfur vacancies are found to increase the retention time of the adsorbed amino acid by many orders of magnitudes in comparison to the ideal pyrite-water interface. The importance of these findings in terms of a possible two-dimensional primordial chemistry on mineral surfaces is discussed.

Entities:  

Year:  2006        PMID: 17044710     DOI: 10.1021/ja063295a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

Review 1.  Adsorption and polymerization of amino acids on mineral surfaces: a review.

Authors:  Jean-François Lambert
Journal:  Orig Life Evol Biosph       Date:  2008-03-15       Impact factor: 1.950

2.  Pyrite-driven reactive oxygen species formation in simulated lung fluid: implications for coal workers' pneumoconiosis.

Authors:  Andrea D Harrington; Shavonne Hylton; Martin A A Schoonen
Journal:  Environ Geochem Health       Date:  2011-10-12       Impact factor: 4.609

3.  Adsorption of amino acids on the magnetite-(111)-surface: a force field study.

Authors:  Andreas Bürger; Uta Magdans; Hermann Gies
Journal:  J Mol Model       Date:  2012-10-16       Impact factor: 1.810

Review 4.  Tracing the Primordial Chemical Life of Glycine: A Review from Quantum Chemical Simulations.

Authors:  Albert Rimola; Nadia Balucani; Cecilia Ceccarelli; Piero Ugliengo
Journal:  Int J Mol Sci       Date:  2022-04-12       Impact factor: 6.208

5.  Formation versus hydrolysis of the peptide bond from a quantum-mechanical viewpoint: The role of mineral surfaces and implications for the origin of life.

Authors:  Albert Rimola; Piero Ugliengo; Mariona Sodupe
Journal:  Int J Mol Sci       Date:  2009-02-26       Impact factor: 5.923

6.  Developing a molecular picture of soil organic matter-mineral interactions by quantifying organo-mineral binding.

Authors:  C J Newcomb; N P Qafoku; J W Grate; V L Bailey; J J De Yoreo
Journal:  Nat Commun       Date:  2017-08-30       Impact factor: 14.919

7.  Size-Dependent Affinity of Glycine and Its Short Oligomers to Pyrite Surface: A Model for Prebiotic Accumulation of Amino Acid Oligomers on a Mineral Surface.

Authors:  Rehana Afrin; Narangerel Ganbaatar; Masashi Aono; H James Cleaves Ii; Taka-Aki Yano; Masahiko Hara
Journal:  Int J Mol Sci       Date:  2018-01-25       Impact factor: 5.923

8.  L-Lysine Amino Acid Adsorption on Zeolite L: a Combined Synchrotron, X-Ray and Neutron Diffraction Study.

Authors:  Giada Beltrami; Annalisa Martucci; Luisa Pasti; Tatiana Chenet; Matteo Ardit; Lara Gigli; Mirco Cescon; Emmanuelle Suard
Journal:  ChemistryOpen       Date:  2020-09-24       Impact factor: 2.630

  8 in total

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