Literature DB >> 17041148

A rice Tc1/mariner-like element transposes in yeast.

Guojun Yang1, Clifford F Weil, Susan R Wessler.   

Abstract

The Tc1/mariner transposable element superfamily is widely distributed in animal and plant genomes. However, no active plant element has been previously identified. Nearly identical copies of a rice (Oryza sativa) Tc1/mariner element called Osmar5 in the genome suggested potential activity. Previous studies revealed that Osmar5 encoded a protein that bound specifically to its own ends. In this report, we show that Osmar5 is an active transposable element by demonstrating that expression of its coding sequence in yeast promotes the excision of a nonautonomous Osmar5 element located in a reporter construct. Element excision produces transposon footprints, whereas element reinsertion occurs at TA dinucleotides that were either tightly linked or unlinked to the excision site. Several site-directed mutations in the transposase abolished activity, whereas mutations in the transposase binding site prevented transposition of the nonautonomous element from the reporter construct. This report of an active plant Tc1/mariner in yeast will provide a foundation for future comparative analyses of animal and plant elements in addition to making a new wide host range transposable element available for plant gene tagging.

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Year:  2006        PMID: 17041148      PMCID: PMC1626630          DOI: 10.1105/tpc.106.045906

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  60 in total

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Authors:  H Shao; Z Tu
Journal:  Genetics       Date:  2001-11       Impact factor: 4.562

2.  Mariner-like transposases are widespread and diverse in flowering plants.

Authors:  Cédric Feschotte; Susan R Wessler
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-26       Impact factor: 11.205

3.  Phylogenetic analysis reveals stowaway-like elements may represent a fourth family of the IS630-Tc1-mariner superfamily.

Authors:  Kime Turcotte; Thomas Bureau
Journal:  Genome       Date:  2002-02       Impact factor: 2.166

4.  Involvement of a bifunctional, paired-like DNA-binding domain and a transpositional enhancer in Sleeping Beauty transposition.

Authors:  Zsuzsanna Izsvák; Dheeraj Khare; Joachim Behlke; Udo Heinemann; Ronald H Plasterk; Zoltán Ivics
Journal:  J Biol Chem       Date:  2002-06-24       Impact factor: 5.157

5.  Excision of the Drosophila mariner transposon Mos1. Comparison with bacterial transposition and V(D)J recombination.

Authors:  Angela Dawson; David J Finnegan
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

6.  Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs).

Authors:  Cédric Feschotte; Lakshmi Swamy; Susan R Wessler
Journal:  Genetics       Date:  2003-02       Impact factor: 4.562

7.  Efficient gene delivery and gene expression in zebrafish using the Sleeping Beauty transposon.

Authors:  Ann E Davidson; Darius Balciunas; Deanna Mohn; Jennifer Shaffer; Spencer Hermanson; Sridhar Sivasubbu; M Pat Cliff; Perry B Hackett; Stephen C Ekker
Journal:  Dev Biol       Date:  2003-11-15       Impact factor: 3.582

8.  Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method.

Authors:  R Daniel Gietz; Robin A Woods
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

9.  The Frog Prince: a reconstructed transposon from Rana pipiens with high transpositional activity in vertebrate cells.

Authors:  Csaba Miskey; Zsuzsanna Izsvák; Ronald H Plasterk; Zoltán Ivics
Journal:  Nucleic Acids Res       Date:  2003-12-01       Impact factor: 16.971

10.  Plasmid accumulation reduces life span in Saccharomyces cerevisiae.

Authors:  Alaric A Falcón; John P Aris
Journal:  J Biol Chem       Date:  2003-08-06       Impact factor: 5.157

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  21 in total

1.  Isolation and characterization of seventy-nine full-length mariner-like transposase genes in the Bambusoideae subfamily.

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Journal:  J Plant Res       Date:  2010-12-17       Impact factor: 2.629

Review 2.  DNA transposons and the evolution of eukaryotic genomes.

Authors:  Cédric Feschotte; Ellen J Pritham
Journal:  Annu Rev Genet       Date:  2007       Impact factor: 16.830

3.  Mobilization of Stowaway-like MITEs in newly formed allohexaploid wheat species.

Authors:  Beery Yaakov; Khalil Kashkush
Journal:  Plant Mol Biol       Date:  2012-08-30       Impact factor: 4.076

4.  Transposition of a rice Mutator-like element in the yeast Saccharomyces cerevisiae.

Authors:  Dongyan Zhao; Ann Ferguson; Ning Jiang
Journal:  Plant Cell       Date:  2015-01-13       Impact factor: 11.277

5.  Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives.

Authors:  Gerhard Menzel; Carmen Krebs; Mercedes Diez; Daniela Holtgräwe; Bernd Weisshaar; André E Minoche; Juliane C Dohm; Heinz Himmelbauer; Thomas Schmidt
Journal:  Plant Mol Biol       Date:  2012-01-13       Impact factor: 4.076

6.  The diversification and activity of hAT transposons in Musa genomes.

Authors:  Gerhard Menzel; Tony Heitkam; Kathrin M Seibt; Faisal Nouroz; Manuela Müller-Stoermer; John S Heslop-Harrison; Thomas Schmidt
Journal:  Chromosome Res       Date:  2014-11-07       Impact factor: 5.239

7.  DNA transposons: nature and applications in genomics.

Authors:  Martín Muñoz-López; José L García-Pérez
Journal:  Curr Genomics       Date:  2010-04       Impact factor: 2.236

8.  Transposition of the Tourist-MITE mPing in yeast: an assay that retains key features of catalysis by the class 2 PIF/Harbinger superfamily.

Authors:  C Nathan Hancock; Feng Zhang; Susan R Wessler
Journal:  Mob DNA       Date:  2010-02-01

9.  ATon, abundant novel nonautonomous mobile genetic elements in yellow fever mosquito (Aedes aegypti).

Authors:  Guojun Yang; Amy Wong; Rebecca Rooke
Journal:  BMC Genomics       Date:  2012-06-27       Impact factor: 3.969

10.  MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements.

Authors:  Guojun Yang
Journal:  BMC Bioinformatics       Date:  2013-06-07       Impact factor: 3.169

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