Literature DB >> 17038320

A three-dimensional model of human organic anion transporter 1: aromatic amino acids required for substrate transport.

Jennifer L Perry1, Neetu Dembla-Rajpal, Laura A Hall, John B Pritchard.   

Abstract

Organic anion transporters (OATs) play a critical role in the handling of endogenous and exogenous organic anions by excretory and barrier tissues. Little is known about the OAT three-dimensional structure or substrate/protein interactions involved in transport. In this investigation, a theoretical three-dimensional model was generated for human OAT1 (hOAT1) based on fold recognition to the crystal structure of the glycerol 3-phosphate transporter (GlpT) from Escherichia coli. GlpT and hOAT1 share several sequence motifs as major facilitator superfamily members. The structural hOAT1 model shows that helices 5, 7, 8, 10, and 11 surround an electronegative putative active site ( approximately 830A(3)). The site opens to the cytoplasm and is surrounded by three residues not previously examined for function (Tyr(230) (domain 5) and Lys(431) and Phe(438) (domain 10)). Effects of these residues on p-aminohippurate (PAH) and cidofovir transport were assessed by point mutations in a Xenopus oocyte expression system. Membrane protein expression was severely limited for the Y230A mutant. For the K431A and F438A mutants, [(3)H]PAH uptake was less than 30% of wild-type hOAT1 uptake after protein expression correction. Reduced V(max) values for the F438A mutant confirmed lower protein expression. In addition, the F438A mutant exhibited an increased affinity for cidofovir but was not significantly different for PAH. Differences in handling of PAH and cidofovir were also observed for the Y230F mutant. Little uptake was determined for cidofovir, whereas PAH uptake was similar to wild-type hOAT1. Therefore, the hOAT1 structural model has identified two new residues, Tyr(230) and Phe(438), which are important for substrate/protein interactions.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17038320      PMCID: PMC1847411          DOI: 10.1074/jbc.M608834200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  41 in total

1.  Fast prediction and visualization of protein binding pockets with PASS.

Authors:  G P Brady; P F Stouten
Journal:  J Comput Aided Mol Des       Date:  2000-05       Impact factor: 3.686

2.  Modeling of loops in protein structures.

Authors:  A Fiser; R K Do; A Sali
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

Review 3.  Comparative protein structure modeling of genes and genomes.

Authors:  M A Martí-Renom; A C Stuart; A Fiser; R Sánchez; F Melo; A Sali
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

4.  3D-Jury: a simple approach to improve protein structure predictions.

Authors:  Krzysztof Ginalski; Arne Elofsson; Daniel Fischer; Leszek Rychlewski
Journal:  Bioinformatics       Date:  2003-05-22       Impact factor: 6.937

Review 5.  Progress in the analysis of membrane protein structure and function.

Authors:  P J L Werten; H W Rémigy; B L de Groot; D Fotiadis; A Philippsen; H Stahlberg; H Grubmüller; A Engel
Journal:  FEBS Lett       Date:  2002-10-02       Impact factor: 4.124

6.  A conserved glutamate residue in transmembrane helix 10 influences substrate specificity of rabbit OCT2 (SLC22A2).

Authors:  Xiaohong Zhang; Nikhil V Shirahatti; Daruka Mahadevan; Stephen H Wright
Journal:  J Biol Chem       Date:  2005-08-08       Impact factor: 5.157

7.  Cationic amino acids involved in dicarboxylate binding of the flounder renal organic anion transporter.

Authors:  Natascha A Wolff; Bettina Grünwald; Björn Friedrich; Florian Lang; Stefan Godehardt; Gerhard Burckhardt
Journal:  J Am Soc Nephrol       Date:  2001-10       Impact factor: 10.121

8.  Arginine 454 and lysine 370 are essential for the anion specificity of the organic anion transporter, rOAT3.

Authors:  B Feng; M J Dresser; Y Shu; S J Johns; K M Giacomini
Journal:  Biochemistry       Date:  2001-05-08       Impact factor: 3.162

Review 9.  Transport of organic anions across the basolateral membrane of proximal tubule cells.

Authors:  B C Burckhardt; G Burckhardt
Journal:  Rev Physiol Biochem Pharmacol       Date:  2003-01-30       Impact factor: 5.545

10.  Role of aromatic transmembrane residues of the organic anion transporter, rOAT3, in substrate recognition.

Authors:  Bo Feng; Yan Shu; Kathleen M Giacomini
Journal:  Biochemistry       Date:  2002-07-16       Impact factor: 3.162

View more
  26 in total

Review 1.  OATPs, OATs and OCTs: the organic anion and cation transporters of the SLCO and SLC22A gene superfamilies.

Authors:  Megan Roth; Amanda Obaidat; Bruno Hagenbuch
Journal:  Br J Pharmacol       Date:  2012-03       Impact factor: 8.739

Review 2.  Physiology, structure, and regulation of the cloned organic anion transporters.

Authors:  C Srimaroeng; J L Perry; J B Pritchard
Journal:  Xenobiotica       Date:  2008-07       Impact factor: 1.908

Review 3.  Ins and outs of major facilitator superfamily antiporters.

Authors:  Christopher J Law; Peter C Maloney; Da-Neng Wang
Journal:  Annu Rev Microbiol       Date:  2008       Impact factor: 15.500

4.  Implications of the alternating access model for organic anion transporter kinetics.

Authors:  Satish A Eraly
Journal:  J Membr Biol       Date:  2008-11-18       Impact factor: 1.843

Review 5.  Drug uptake systems in liver and kidney: a historic perspective.

Authors:  B Hagenbuch
Journal:  Clin Pharmacol Ther       Date:  2009-11-18       Impact factor: 6.875

Review 6.  The organic anion transporter (OAT) family: a systems biology perspective.

Authors:  Sanjay K Nigam; Kevin T Bush; Gleb Martovetsky; Sun-Young Ahn; Henry C Liu; Erin Richard; Vibha Bhatnagar; Wei Wu
Journal:  Physiol Rev       Date:  2015-01       Impact factor: 37.312

7.  A substrate binding hinge domain is critical for transport-related structural changes of organic cation transporter 1.

Authors:  Brigitte Egenberger; Valentin Gorboulev; Thorsten Keller; Dmitry Gorbunov; Neha Gottlieb; Dietmar Geiger; Thomas D Mueller; Hermann Koepsell
Journal:  J Biol Chem       Date:  2012-07-18       Impact factor: 5.157

8.  Molecular Mechanisms for Species Differences in Organic Anion Transporter 1, OAT1: Implications for Renal Drug Toxicity.

Authors:  Ling Zou; Adrian Stecula; Anshul Gupta; Bhagwat Prasad; Huan-Chieh Chien; Sook Wah Yee; Li Wang; Jashvant D Unadkat; Simone H Stahl; Katherine S Fenner; Kathleen M Giacomini
Journal:  Mol Pharmacol       Date:  2018-05-02       Impact factor: 4.436

9.  Functional characterization of nonsynonymous single nucleotide polymorphisms in the human organic anion transporter 4 (hOAT4).

Authors:  Fanfan Zhou; Ling Zhu; Pei H Cui; W Bret Church; Michael Murray
Journal:  Br J Pharmacol       Date:  2009-12-10       Impact factor: 8.739

10.  MATE1 has an external COOH terminus, consistent with a 13-helix topology.

Authors:  Xiaohong Zhang; Stephen H Wright
Journal:  Am J Physiol Renal Physiol       Date:  2009-06-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.