Literature DB >> 17035691

Practical aspects of uniform stable isotope labeling of higher plants for heteronuclear NMR-based metabolomics.

Jun Kikuchi1, Takashi Hirayama.   

Abstract

Analytical methods for probing plant metabolism are taking on new significance in the era of functional genomics, metabolomics, and systems biology. Nuclear magnetic resonance (NMR) is becoming a key technology in plant metabolomics. Stable isotope labeling of cultured cells and higher organisms has been especially promising in that it allows the use of advanced heteronuclear NMR methodologies through a combination of in vivo and in vitro measurements. This new approach provides much better resolution of the metabolite mixture signals in the multidimensional NMR spectra than does the conventional one-dimensional 1H-NMR previously used in plant metabolomics. In this chapter, we describe the practical aspects of two key NMR technologies: uniform stable labeling of plants and in vitro heteronuclear NMR.

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Year:  2007        PMID: 17035691     DOI: 10.1007/978-1-59745-244-1_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  16 in total

1.  Concentration of metabolites from low-density planktonic communities for environmental metabolomics using nuclear magnetic resonance spectroscopy.

Authors:  R Craig Everroad; Seiji Yoshida; Yuuri Tsuboi; Yasuhiro Date; Jun Kikuchi; Shigeharu Moriya
Journal:  J Vis Exp       Date:  2012-04-07       Impact factor: 1.355

2.  Ethanol induces heat tolerance in plants by stimulating unfolded protein response.

Authors:  Akihiro Matsui; Daisuke Todaka; Maho Tanaka; Kayoko Mizunashi; Satoshi Takahashi; Yuji Sunaoshi; Yuuri Tsuboi; Junko Ishida; Khurram Bashir; Jun Kikuchi; Miyako Kusano; Makoto Kobayashi; Kanako Kawaura; Motoaki Seki
Journal:  Plant Mol Biol       Date:  2022-06-22       Impact factor: 4.335

3.  ECOMICS: a web-based toolkit for investigating the biomolecular web in ecosystems using a trans-omics approach.

Authors:  Yoshiyuki Ogata; Eisuke Chikayama; Yusuke Morioka; R Craig Everroad; Amiu Shino; Akihiro Matsushima; Hideaki Haruna; Shigeharu Moriya; Tetsuro Toyoda; Jun Kikuchi
Journal:  PLoS One       Date:  2012-02-01       Impact factor: 3.240

4.  Recent advances of metabolomics in plant biotechnology.

Authors:  Yozo Okazaki; Kazuki Saito
Journal:  Plant Biotechnol Rep       Date:  2011-07-29       Impact factor: 2.010

5.  Multidimensional High-Resolution Magic Angle Spinning and Solution-State NMR Characterization of (13)C-labeled Plant Metabolites and Lignocellulose.

Authors:  Tetsuya Mori; Yuuri Tsuboi; Nobuhiro Ishida; Nobuyuki Nishikubo; Taku Demura; Jun Kikuchi
Journal:  Sci Rep       Date:  2015-07-06       Impact factor: 4.379

6.  Evaluation and characterization of bacterial metabolic dynamics with a novel profiling technique, real-time metabolotyping.

Authors:  Shinji Fukuda; Yumiko Nakanishi; Eisuke Chikayama; Hiroshi Ohno; Tsuneo Hino; Jun Kikuchi
Journal:  PLoS One       Date:  2009-03-16       Impact factor: 3.240

7.  Differences in Cellulosic Supramolecular Structure of Compositionally Similar Rice Straw Affect Biomass Metabolism by Paddy Soil Microbiota.

Authors:  Tatsuki Ogura; Yasuhiro Date; Jun Kikuchi
Journal:  PLoS One       Date:  2013-06-19       Impact factor: 3.240

8.  Correlation exploration of metabolic and genomic diversity in rice.

Authors:  Keiichi Mochida; Taku Furuta; Kaworu Ebana; Kazuo Shinozaki; Jun Kikuchi
Journal:  BMC Genomics       Date:  2009-12-01       Impact factor: 3.969

9.  Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production.

Authors:  Hidetoshi Morita; Hidehiro Toh; Shinji Fukuda; Hiroshi Horikawa; Kenshiro Oshima; Takehito Suzuki; Masaru Murakami; Shin Hisamatsu; Yukio Kato; Tatsuya Takizawa; Hideo Fukuoka; Tetsuhiko Yoshimura; Kikuji Itoh; Daniel J O'Sullivan; Larry L McKay; Hiroshi Ohno; Jun Kikuchi; Toshio Masaoka; Masahira Hattori
Journal:  DNA Res       Date:  2008-05-16       Impact factor: 4.458

10.  Systematic NMR analysis of stable isotope labeled metabolite mixtures in plant and animal systems: coarse grained views of metabolic pathways.

Authors:  Eisuke Chikayama; Michitaka Suto; Takashi Nishihara; Kazuo Shinozaki; Takashi Hirayama; Jun Kikuchi
Journal:  PLoS One       Date:  2008-11-25       Impact factor: 3.240

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