Literature DB >> 17035491

Genotyping of clinical herpes simplex virus type 1 isolates by use of restriction enzymes.

Peter Norberg1, Tomas Bergström, Jan-Ake Liljeqvist.   

Abstract

Recently, three distinct genotypes of clinical herpes simplex virus type 1 (HSV-1) isolates were identified based on DNA sequence information and phylogenetic analysis of clinical isolates and laboratory strains. We utilized single-nucleotide polymorphism within the genes coding for glycoproteins G and I for rapid genotype classification by PCR and restriction enzyme cleavage. The method is suitable for high-scale genotyping of clinical HSV-1 isolates and for the detection of recombinants.

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Year:  2006        PMID： 17035491      PMCID： PMC1698414          DOI： 10.1128/JCM.00421-06

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  13 in total

1.  A herpes simplex virus 1 recombinant lacking the glycoprotein G coding sequences is defective in entry through apical surfaces of polarized epithelial cells in culture and in vivo.

Authors:  L C Tran; J M Kissner; L E Westerman; A E Sears
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

Review 2.  Neonatal herpes: what have we learned.

Authors:  David W Kimberlin; Richard J Whitley
Journal:  Semin Pediatr Infect Dis       Date:  2005-01

3.  Detection and typing of Herpes Simplex virus (HSV) in mucocutaneous samples by TaqMan PCR targeting a gB segment homologous for HSV types 1 and 2.

Authors:  Lilly Namvar; Sigvard Olofsson; Tomas Bergström; Magnus Lindh
Journal:  J Clin Microbiol       Date:  2005-05       Impact factor: 5.948

Review 4.  Human herpes simplex virus keratitis: the pathogenesis revisited.

Authors:  Lies Remeijer; Albert Osterhaus; Georges Verjans
Journal:  Ocul Immunol Inflamm       Date:  2004-12       Impact factor: 3.070

5.  Herpes simplex virus type 1 restriction fragment polymorphism determined using southern hybridization.

Authors:  K Umene; T Eto; R Mori; Y Takagi; L W Enquist
Journal:  Arch Virol       Date:  1984       Impact factor: 2.574

6.  Genotyping of herpes simplex virus type 1 strains isolated from ocular materials of patients with herpetic keratitis.

Authors:  Kenichi Umene; Tomoyuki Inoue; Yoshitsugu Inoue; Yoshikazu Shimomura
Journal:  J Med Virol       Date:  2003-09       Impact factor: 2.327

7.  Quantitative analysis of genomic polymorphism of herpes simplex virus type 1 strains from six countries: studies of molecular evolution and molecular epidemiology of the virus.

Authors:  H Sakaoka; K Kurita; Y Iida; S Takada; K Umene; Y T Kim; C S Ren; A J Nahmias
Journal:  J Gen Virol       Date:  1994-03       Impact factor: 3.891

8.  High recombination rate in herpes simplex virus type 1 natural populations suggests significant co-infection.

Authors:  Rory Bowden; Hiroshi Sakaoka; Peter Donnelly; Ryk Ward
Journal:  Infect Genet Evol       Date:  2004-06       Impact factor: 3.342

9.  Herpes simplex virus immunoglobulin G Fc receptor activity depends on a complex of two viral glycoproteins, gE and gI.

Authors:  D C Johnson; M C Frame; M W Ligas; A M Cross; N D Stow
Journal:  J Virol       Date:  1988-04       Impact factor: 5.103

Review 10.  Neonatal herpes simplex virus infection.

Authors:  Richard Whitley
Journal:  Curr Opin Infect Dis       Date:  2004-06       Impact factor: 4.915
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  14 in total

1.  Sequence variability in clinical and laboratory isolates of herpes simplex virus 1 reveals new mutations.

Authors:  Moriah L Szpara; Lance Parsons; L W Enquist
Journal:  J Virol       Date:  2010-03-10       Impact factor: 5.103

2.  Prognostic value of intrathecal antibody production and DNA viral load in cerebrospinal fluid of patients with herpes simplex encephalitis.

Authors:  Anders Hjalmarsson; Fredrik Granath; Marianne Forsgren; Maria Brytting; Paul Blomqvist; Birgit Sköldenberg
Journal:  J Neurol       Date:  2009-04-08       Impact factor: 4.849

3.  Utilization of microsatellite polymorphism for differentiating herpes simplex virus type 1 strains.

Authors:  C Deback; D Boutolleau; C Depienne; C E Luyt; P Bonnafous; A Gautheret-Dejean; I Garrigue; H Agut
Journal:  J Clin Microbiol       Date:  2008-12-24       Impact factor: 5.948

4.  Genotypic Characterization of Herpes Simplex Virus Type 1 Isolates in Immunocompromised Patients in Rio de Janeiro, Brazil.

Authors:  Amanda Perse da Silva; Amanda de Oliveira Lopes; Yasmine Rangel Vieira; Adilson José de Almeida; Fernando Samuel Sion; Beatriz Grinsztejn; Sandra Wagner; Vanessa Salete de Paula
Journal:  PLoS One       Date:  2015-09-25       Impact factor: 3.240

Review 5.  History and genomic sequence analysis of the herpes simplex virus 1 KOS and KOS1.1 sub-strains.

Authors:  Robert C Colgrove; Xueqiao Liu; Anthony Griffiths; Priya Raja; Neal A Deluca; Ruchi M Newman; Donald M Coen; David M Knipe
Journal:  Virology       Date:  2015-11-05       Impact factor: 3.616

6.  Recombination of Globally Circulating Varicella-Zoster Virus.

Authors:  Peter Norberg; Daniel P Depledge; Samit Kundu; Claire Atkinson; Julianne Brown; Tanzina Haque; Yusuf Hussaini; Eithne MacMahon; Pamela Molyneaux; Vassiliki Papaevangelou; Nitu Sengupta; Evelyn S C Koay; Julian W Tang; Gillian S Underhill; Anna Grahn; Marie Studahl; Judith Breuer; Tomas Bergström
Journal:  J Virol       Date:  2015-07       Impact factor: 6.549

7.  A genome-wide comparative evolutionary analysis of herpes simplex virus type 1 and varicella zoster virus.

Authors:  Peter Norberg; Shaun Tyler; Alberto Severini; Rich Whitley; Jan-Åke Liljeqvist; Tomas Bergström
Journal:  PLoS One       Date:  2011-07-25       Impact factor: 3.240

8.  Phylogenetic comparison of exonic US4, US7 and UL44 regions of clinical herpes simplex virus type 1 isolates showed lack of association between their anatomic sites of infection and genotypic/sub genotypic classification.

Authors:  Anusha Harishankar; Malathi Jambulingam; Raajaram Gowrishankar; Annapoorni Venkatachalam; Umashankar Vetrivel; Sathyabaarathi Ravichandran; Samson Moses Yesupadam; Hajib Narahari Rao Madhavan
Journal:  Virol J       Date:  2012-03-14       Impact factor: 4.099

9.  Genetic variability in the region encompassing reiteration VII of herpes simplex virus type 1, including deletions and multiplications related to recombination between direct repeats.

Authors:  Kenichi Umene; Masami Yoshida; Yasuyuki Fukumaki
Journal:  Springerplus       Date:  2015-04-30

10.  Genotyping of a microsatellite locus to differentiate clinical Ostreid herpesvirus 1 specimens.

Authors:  Tristan Renault; Gwenaëlle Tchaleu; Nicole Faury; Pierrick Moreau; Amélie Segarra; Valérie Barbosa-Solomieu; Sylvie Lapègue
Journal:  Vet Res       Date:  2014-01-10       Impact factor: 3.683
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