Literature DB >> 17031958

Proline zwitterion dynamics in solution, glass, and crystalline state.

Josef Kapitán1, Vladimír Baumruk, Vladimír Kopecký, Radek Pohl, Petr Bour.   

Abstract

Raman and Raman optical activity spectra of L- and D-proline zwitterionic (PROZW) forms were recorded for H(2)O and D(2)O solutions in a wide frequency range and analyzed with respect to the motion of the proline ring and rotation of the carbonyl group. The solution spectra were additionally compared to Raman scattering of glass and crystalline powder proline. Solution and glass spectral band broadenings are similar and reveal information about the extent of internal molecular motion. Two distinct but equally populated flexible forms were found in the glass and the solution. The equal population is consistent with NMR data, temperature, and concentration dependencies. The molecular flexibility is reduced significantly in the crystal, however, where only one conformer is present. Consequently, the crystal bands are narrow and exhibit minor frequency shifts. The spectra were interpreted with the aid of density functional theory computations involving both continuum and explicit solvent. A two-dimensional potential energy surface pertaining to the five-member ring puckering coordinates was constructed and used for dynamical averaging of spectral properties. Comparison of the computed and experimental bandwidths suggests that the puckering is strongly correlated with the carbonyl rotation. An averaging over these two motions produces similar results. The interpretation of the Raman experiments with the aid of the simulation techniques also indicates that the environment modulates properties of the hydrophobic part of the molecule indirectly by interacting with the ionic group. Such behavior may be important for the reactivity and biological activity of proline-containing peptides and proteins.

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Year:  2006        PMID: 17031958     DOI: 10.1021/ja062958l

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  5 in total

1.  Characterizing aqueous solution conformations of a peptide backbone using Raman optical activity computations.

Authors:  Parag Mukhopadhyay; Gérard Zuber; David N Beratan
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

2.  Complex of amyloid beta peptides with 24-hydroxycholesterol and its effect on hemicholinium-3 sensitive carriers.

Authors:  Zdena Kristofiková; Vladimír Kopecký; Katerina Hofbauerová; Petra Hovorková; Daniela Rípová
Journal:  Neurochem Res       Date:  2007-08-24       Impact factor: 3.996

3.  Stabilization of zwitterionic versus canonical proline by water molecules.

Authors:  Gang Yang; Lijun Zhou; Yang Chen
Journal:  Springerplus       Date:  2016-01-06

4.  A proline-based neuraminidase inhibitor: DFT studies on the zwitterion conformation, stability and formation.

Authors:  Zhi-Wei Yang; Xiao-Min Wu; Li-Jun Zhou; Gang Yang
Journal:  Int J Mol Sci       Date:  2009-09-07       Impact factor: 6.208

5.  Raman spectroscopy adds complementary detail to the high-resolution x-ray crystal structure of photosynthetic PsbP from Spinacia oleracea.

Authors:  Vladimir Kopecky; Jaroslava Kohoutova; Mikalai Lapkouski; Katerina Hofbauerova; Zofie Sovova; Olga Ettrichova; Sergio González-Pérez; Alexander Dulebo; David Kaftan; Ivana Kuta Smatanova; Jose L Revuelta; Juan B Arellano; Jannette Carey; Rüdiger Ettrich
Journal:  PLoS One       Date:  2012-10-05       Impact factor: 3.240

  5 in total

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