Literature DB >> 17031935

Base and phosphate electron detachment energies of deoxyribonucleotide anions.

Viatcheslav V Zakjevskii1, Samuel J King, Olga Dolgounitcheva, Viatcheslav G Zakrzewski, Joseph Vincent Ortiz.   

Abstract

Photoelectron spectra of deoxyribonucleotide anions are interpreted with ab initio, electron propagator calculations. Ground-state structures display hydrogen bonds which are not present in less stable minima that resemble Watson-Crick fragment geometries. For the adenosine and thymidine anions, there are two vertical electron detachment energies (VEDEs) within 0.1 eV of each other that correspond to phosphate- and base-centered Dyson orbitals (DOs). The first VEDE of the cytidine anion belongs to a phosphate-centered DO. The anomalously low VEDE of the guanosine anion is assigned to a base-centered, pi DO. Higher VEDEs of all four anions also are assigned.

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Year:  2006        PMID: 17031935     DOI: 10.1021/ja064621p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Electron photodetachment dissociation of DNA anions with covalently or noncovalently bound chromophores.

Authors:  Valérie Gabelica; Frédéric Rosu; Edwin De Pauw; Rodolphe Antoine; Thibault Tabarin; Michel Broyer; Philippe Dugourd
Journal:  J Am Soc Mass Spectrom       Date:  2007-08-22       Impact factor: 3.109

2.  Solvation free energies of molecules. The most stable anionic tautomers of uracil.

Authors:  Maciej Haranczyk; Maciej Gutowski; Arieh Warshel
Journal:  Phys Chem Chem Phys       Date:  2008-06-11       Impact factor: 3.676

Review 3.  Mechanisms for DNA charge transport.

Authors:  Joseph C Genereux; Jacqueline K Barton
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

Review 4.  Progress in ab initio QM/MM free-energy simulations of electrostatic energies in proteins: accelerated QM/MM studies of pKa, redox reactions and solvation free energies.

Authors:  Shina C L Kamerlin; Maciej Haranczyk; Arieh Warshel
Journal:  J Phys Chem B       Date:  2009-02-05       Impact factor: 2.991

Review 5.  Theoretical Modeling of Redox Potentials of Biomolecules.

Authors:  Cheng Giuseppe Chen; Alessandro Nicola Nardi; Andrea Amadei; Marco D'Abramo
Journal:  Molecules       Date:  2022-02-05       Impact factor: 4.411

6.  Guanosine Dianions Hydrated by One to Four Water Molecules.

Authors:  Samanta Makurat; Qinqin Yuan; Jacek Czub; Lidia Chomicz-Mańka; Wenjin Cao; Xue-Bin Wang; Janusz Rak
Journal:  J Phys Chem Lett       Date:  2022-04-05       Impact factor: 6.888

7.  Characterization of modified RNA by top-down mass spectrometry.

Authors:  Monika Taucher; Kathrin Breuker
Journal:  Angew Chem Int Ed Engl       Date:  2012-10-08       Impact factor: 15.336

  7 in total

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