Literature DB >> 17029722

The Synthesizing Unit as model for the stoichiometric fusion and branching of metabolic fluxes.

S A Kooijman1.   

Abstract

The Synthesizing Unit (SU) binds given numbers of substrate molecules of several types of substrate to produce a product molecule or set of product molecules. Irreversible binding results in relatively simple and explicit expressions for the rate of product formation. Reversible binding can be implemented with relative ease in the carrier-SU complex, where the products of a set of carriers (a special type of SU) serve as substrate for an SU or set of SUs. A simple and parameter sparse approximation is presented for the production rate of a generalized compound, i.e. a rich mixture of compounds that does not change in composition. An analysis of Droop's data on the growth of a haptophyte on phosphate and vitamin B(12) reserves illustrates the application of SUs.

Entities:  

Year:  1998        PMID: 17029722     DOI: 10.1016/s0301-4622(98)00162-8

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  5 in total

Review 1.  Dynamic energy budget theory restores coherence in biology.

Authors:  Tânia Sousa; Tiago Domingos; J-C Poggiale; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-12       Impact factor: 6.237

Review 2.  Subcellular metabolic organization in the context of dynamic energy budget and biochemical systems theories.

Authors:  S Vinga; A R Neves; H Santos; B W Brandt; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-12       Impact factor: 6.237

3.  Benchmarks in organism performance and their use in comparative analyses.

Authors:  Peter J Edmunds; Hollie M Putnam; Roger M Nisbet; Erik B Muller
Journal:  Oecologia       Date:  2011-05-08       Impact factor: 3.225

4.  Independent colimitation for carbon dioxide and inorganic phosphorus.

Authors:  Elly Spijkerman; Francisco de Castro; Ursula Gaedke
Journal:  PLoS One       Date:  2011-12-01       Impact factor: 3.240

5.  Finding Liebig's law of the minimum.

Authors:  Jinyun Tang; William J Riley
Journal:  Ecol Appl       Date:  2021-10-20       Impact factor: 6.105

  5 in total

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