Literature DB >> 17028791

Renormalization group analysis of polymer cyclization with non-equilibrium initial conditions.

B A Friedman1, C Yeung.   

Abstract

We develop a renormalization group approach for cyclizing polymers for the case when chain ends are initially close together (ring initial conditions). We analyze the behavior at times much shorter than the longest polymer relaxation time. In agreement with our previous work (Europhys. Lett. 73, 621 (2006)) we find that the leading time dependence of the reaction rate k(t) for ring initial conditions and equilibrium initial conditions are related, namely k (ring)(t) proportional, variant t (-delta) and k (eq)(t) proportional, variant t (1-delta) for times less than the longest polymer relaxation time. Here delta is an effective exponent which approaches delta = 5/4 for very long Rouse chains. Our present analysis also suggests a "sub-leading" term proportional to (ln t)/t which should be particularly significant for smaller values of the renormalized reaction rate and early times. For Zimm dynamics, our RG analysis indicates that the leading time dependence for the reaction rate is k(t) approximately 1/t for very long chains. The leading term is again consistent with the expected relation between ring and equilibrium initial conditions. We also find a logarithmic correction term which we "exponentiate" to a logarithmic form with a Landau pole. The presence of the logarithm is particularly important for smaller chains and, in the Zimm case, large values of the reaction rate.

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Year:  2006        PMID: 17028791     DOI: 10.1140/epje/i2006-10042-0

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  7 in total

1.  Cyclization of a polymer: first-passage problem for a non-Markovian process.

Authors:  I M Sokolov
Journal:  Phys Rev Lett       Date:  2003-02-26       Impact factor: 9.161

2.  Universal behavior in reacting polymer systems.

Authors: 
Journal:  Phys Rev Lett       Date:  1988-01-04       Impact factor: 9.161

3.  Diffusion-controlled first contact of the ends of a polymer: crossover between two scaling regimes.

Authors:  Jeff Z Y Chen; Heng-Kwong Tsao; Yu-Jane Sheng
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-09-08

4.  Cyclization of Rouse chains at long- and short-time scales.

Authors:  Chuck Yeung; Barry Friedman
Journal:  J Chem Phys       Date:  2005-06-01       Impact factor: 3.488

5.  Theory of polymer cyclization.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1989-11-15

6.  Renormalization-group study of field-theoretic A+A-->0-slash.

Authors: 
Journal:  Phys Rev A       Date:  1992-12-15       Impact factor: 3.140

7.  Measuring the rate of intramolecular contact formation in polypeptides.

Authors:  L J Lapidus; W A Eaton; J Hofrichter
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

  7 in total

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