Literature DB >> 17028322

emb-4 is a conserved gene required for efficient germline-specific chromatin remodeling during Caenorhabditis elegans embryogenesis.

Paula M Checchi1, William G Kelly.   

Abstract

In C. elegans, germline blastomeres are initially kept transcriptionally quiescent by the maternally loaded CCCH zinc-finger protein PIE-1. PIE-1 disappears upon the birth of the primordial germ cells Z2 and Z3, yet these cells appear to remain quiescent. We have previously demonstrated that there is a chromatin-based repression that succeeds PIE-1 degradation. The chromatin in Z2/Z3 loses certain histone modifications, including histone H3 lysine 4 dimethylation (H3K4me2), a conserved marker for transcriptionally competent chromatin. We find that mutations in the maternal-effect gene emb-4 cause defects in both PIE-1 degradation and germline-specific chromatin remodeling. emb-4 encodes a highly conserved protein with orthologs in fly, mouse, and human and has a subtle role in Notch signaling. The embryonic phenotype of emb-4 is consistent with a defect in the efficient and timely activation of developmental programs, including germline chromatin remodeling. We also find that, as in early somatic blastomeres, the degradation of PIE-1 in Z2/Z3 is facilitated by zinc-finger-interacting protein ZIF-1, and in the absence of either zif-1 or emb-4, PIE-1 is abnormally retained in Z2/Z3.

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Year:  2006        PMID: 17028322      PMCID: PMC1698644          DOI: 10.1534/genetics.106.063701

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  40 in total

Review 1.  The germline in C. elegans: origins, proliferation, and silencing.

Authors:  G Seydoux; T Schedl
Journal:  Int Rev Cytol       Date:  2001

2.  The language of covalent histone modifications.

Authors:  B D Strahl; C D Allis
Journal:  Nature       Date:  2000-01-06       Impact factor: 49.962

3.  Asymmetric segregation of PIE-1 in C. elegans is mediated by two complementary mechanisms that act through separate PIE-1 protein domains.

Authors:  K J Reese; M A Dunn; J A Waddle; G Seydoux
Journal:  Mol Cell       Date:  2000-08       Impact factor: 17.970

Review 4.  Histone and chromatin cross-talk.

Authors:  Wolfgang Fischle; Yanming Wang; C David Allis
Journal:  Curr Opin Cell Biol       Date:  2003-04       Impact factor: 8.382

5.  Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.

Authors:  Melanie D Ohi; Andrew J Link; Liping Ren; Jennifer L Jennings; W Hayes McDonald; Kathleen L Gould
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

6.  Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans.

Authors:  L Timmons; D L Court; A Fire
Journal:  Gene       Date:  2001-01-24       Impact factor: 3.688

Review 7.  Making worm guts: the gene regulatory network of the Caenorhabditis elegans endoderm.

Authors:  Morris F Maduro; Joel H Rothman
Journal:  Dev Biol       Date:  2002-06-01       Impact factor: 3.582

8.  Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi.

Authors:  Femke Simmer; Marcel Tijsterman; Susan Parrish; Sandhya P Koushika; Michael L Nonet; Andrew Fire; Julie Ahringer; Ronald H A Plasterk
Journal:  Curr Biol       Date:  2002-08-06       Impact factor: 10.834

9.  Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Authors:  Ravi S Kamath; Andrew G Fraser; Yan Dong; Gino Poulin; Richard Durbin; Monica Gotta; Alexander Kanapin; Nathalie Le Bot; Sergio Moreno; Marc Sohrmann; David P Welchman; Peder Zipperlen; Julie Ahringer
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

10.  A model of repression: CTD analogs and PIE-1 inhibit transcriptional elongation by P-TEFb.

Authors:  Fan Zhang; Matjaz Barboric; T Keith Blackwell; B Matija Peterlin
Journal:  Genes Dev       Date:  2003-03-15       Impact factor: 11.361

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  11 in total

1.  The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing.

Authors:  Tianran Jia; Bailong Zhang; Chenjiang You; Yong Zhang; Liping Zeng; Shengjun Li; Kaeli C M Johnson; Bin Yu; Xin Li; Xuemei Chen
Journal:  Plant Cell       Date:  2017-09-25       Impact factor: 11.277

Review 2.  Specifying and protecting germ cell fate.

Authors:  Susan Strome; Dustin Updike
Journal:  Nat Rev Mol Cell Biol       Date:  2015-07       Impact factor: 94.444

3.  EMB-4: a predicted ATPase that facilitates lin-12 activity in Caenorhabditis elegans.

Authors:  Iskra Katic; Iva Greenwald
Journal:  Genetics       Date:  2006-10-09       Impact factor: 4.562

4.  A genetic screen for temperature-sensitive morphogenesis-defective Caenorhabditis elegans mutants.

Authors:  Molly C Jud; Josh Lowry; Thalia Padilla; Erin Clifford; Yuqi Yang; Francesca Fennell; Alexander K Miller; Danielle Hamill; Austin M Harvey; Martha Avila-Zavala; Hong Shao; Nhan Nguyen Tran; Zhirong Bao; Bruce Bowerman
Journal:  G3 (Bethesda)       Date:  2021-04-15       Impact factor: 3.154

5.  A network of genes antagonistic to the LIN-35 retinoblastoma protein of Caenorhabditis elegans.

Authors:  Stanley R G Polley; David S Fay
Journal:  Genetics       Date:  2012-04-27       Impact factor: 4.562

6.  A role for Set1/MLL-related components in epigenetic regulation of the Caenorhabditis elegans germ line.

Authors:  Tengguo Li; William G Kelly
Journal:  PLoS Genet       Date:  2011-03-24       Impact factor: 5.917

7.  Trans-generational epigenetic regulation of C. elegans primordial germ cells.

Authors:  Hirofumi Furuhashi; Teruaki Takasaki; Andreas Rechtsteiner; Tengguo Li; Hiroshi Kimura; Paula M Checchi; Susan Strome; William G Kelly
Journal:  Epigenetics Chromatin       Date:  2010-08-12       Impact factor: 4.954

8.  Transgenerational epigenetics in the germline cycle of Caenorhabditis elegans.

Authors:  William G Kelly
Journal:  Epigenetics Chromatin       Date:  2014-03-29       Impact factor: 4.954

9.  DAF-18/PTEN inhibits germline zygotic gene activation during primordial germ cell quiescence.

Authors:  Amanda L Fry; Amy K Webster; Julia Burnett; Rojin Chitrakar; L Ryan Baugh; E Jane Albert Hubbard
Journal:  PLoS Genet       Date:  2021-07-21       Impact factor: 5.917

Review 10.  Transcriptional quiescence in primordial germ cells.

Authors:  Lyubov A Lebedeva; Konstantin V Yakovlev; Eugene N Kozlov; Paul Schedl; Girish Deshpande; Yulii V Shidlovskii
Journal:  Crit Rev Biochem Mol Biol       Date:  2018-10-03       Impact factor: 8.250

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