Literature DB >> 17028237

Molecular detection of epiphytic Acaryochloris spp. on marine macroalgae.

Satoshi Ohkubo1, Hideaki Miyashita, Akio Murakami, Haruko Takeyama, Tohru Tsuchiya, Mamoru Mimuro.   

Abstract

A molecular method for detecting the epiphyte community on marine macroalgae was developed by using PCR-denaturing gradient gel electrophoresis. Selective amplification of 16S rRNA gene fragments from either cyanobacteria or algal plastids improved the detection of minor epiphytes. Two phylotypes of Acaryochloris, a chlorophyll d-containing cyanobacterium, were found not only on red macroalgae but also on green and brown macroalgae.

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Year:  2006        PMID： 17028237      PMCID： PMC1694208          DOI： 10.1128/AEM.01148-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  12 in total

1.  Long-term compositional changes after transplant in a microbial mat cyanobacterial community revealed using a polyphasic approach.

Authors:  R M Abed; F Garcia-Pichel
Journal:  Environ Microbiol       Date:  2001-01       Impact factor: 5.491

2.  Spatial analysis of archaeal community structure in grassland soil.

Authors:  Graeme W Nicol; L Anne Glover; James I Prosser
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

3.  Microbial characterization of biofilms in domestic drains and the establishment of stable biofilm microcosms.

Authors:  Andrew J McBain; Robert G Bartolo; Carl E Catrenich; Duane Charbonneau; Ruth G Ledder; Alexander H Rickard; Sharon A Symmons; Peter Gilbert
Journal:  Appl Environ Microbiol       Date:  2003-01       Impact factor: 4.792

4.  Cyanobacterial diversity in natural and artificial microbial mats of Lake Fryxell (McMurdo Dry Valleys, Antarctica): a morphological and molecular approach.

Authors:  Arnaud Taton; Stana Grubisic; Evelyne Brambilla; Rutger De Wit; Annick Wilmotte
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

5.  Chlorophyll d in an epiphytic cyanobacterium of red algae.

Authors:  Akio Murakami; Hideaki Miyashita; Mineo Iseki; Kyoko Adachi; Mamoru Mimuro
Journal:  Science       Date:  2004-03-12       Impact factor: 47.728

6.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

7.  Testing of primers for the study of cyanobacterial molecular diversity by DGGE.

Authors:  C Boutte; S Grubisic; P Balthasart; A Wilmotte
Journal:  J Microbiol Methods       Date:  2005-11-14       Impact factor: 2.363

8.  Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA.

Authors:  G Muyzer; E C de Waal; A G Uitterlinden
Journal:  Appl Environ Microbiol       Date:  1993-03       Impact factor: 4.792

9.  Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community.

Authors:  M J Ferris; G Muyzer; D M Ward
Journal:  Appl Environ Microbiol       Date:  1996-02       Impact factor: 4.792

10.  Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments.

Authors:  G Muyzer; A Teske; C O Wirsen; H W Jannasch
Journal:  Arch Microbiol       Date:  1995-09       Impact factor: 2.552
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  15 in total

1.  Epibiosis of oxygenic phototrophs containing chlorophylls a, b, c, and d on the colonial ascidian Cystodytes dellechiajei.

Authors:  Manuel Martínez-García; Michal Koblížek; Susanna López-Legentil; Josefa Antón
Journal:  Microb Ecol       Date:  2010-06-08       Impact factor: 4.552

Review 2.  Unique photosystems in Acaryochloris marina.

Authors:  Shunsuke Ohashi; Hideaki Miyashita; Naoki Okada; Tatsuya Iemura; Tadashi Watanabe; Masami Kobayashi
Journal:  Photosynth Res       Date:  2008-11-05       Impact factor: 3.573

Review 3.  An overview on chlorophylls and quinones in the photosystem I-type reaction centers.

Authors:  Shunsuke Ohashi; Tatsuya Iemura; Naoki Okada; Shingo Itoh; Hayato Furukawa; Masaaki Okuda; Mayumi Ohnishi-Kameyama; Takuro Ogawa; Hideaki Miyashita; Tadashi Watanabe; Shigeru Itoh; Hirozo Oh-oka; Kazuhito Inoue; Masami Kobayashi
Journal:  Photosynth Res       Date:  2010-02-18       Impact factor: 3.573

4.  Two unique cyanobacteria lead to a traceable approach of the first appearance of oxygenic photosynthesis.

Authors:  Mamoru Mimuro; Tatsuya Tomo; Tohru Tsuchiya
Journal:  Photosynth Res       Date:  2008-06-21       Impact factor: 3.573

5.  A niche for cyanobacteria producing chlorophyll f within a microbial mat.

Authors:  Satoshi Ohkubo; Hideaki Miyashita
Journal:  ISME J       Date:  2017-06-16       Impact factor: 10.302

6.  Rapid TaqMan-based quantification of chlorophyll d-containing cyanobacteria in the genus Acaryochloris.

Authors:  Lars Behrendt; Jeppe L Nielsen; Søren J Sørensen; Anthony W D Larkum; Jakob R Winther; Michael Kühl
Journal:  Appl Environ Microbiol       Date:  2014-03-14       Impact factor: 4.792

7.  Endolithic chlorophyll d-containing phototrophs.

Authors:  Lars Behrendt; Anthony W D Larkum; Anders Norman; Klaus Qvortrup; Min Chen; Peter Ralph; Søren J Sørensen; Erik Trampe; Michael Kühl
Journal:  ISME J       Date:  2010-12-16       Impact factor: 10.302

Review 8.  A viewpoint: why chlorophyll a?

Authors:  Lars Olof Björn; George C Papageorgiou; Robert E Blankenship
Journal:  Photosynth Res       Date:  2009-01-06       Impact factor: 3.573

9.  Chromatic photoacclimation extends utilisable photosynthetically active radiation in the chlorophyll d-containing cyanobacterium, Acaryochloris marina.

Authors:  Zane Duxbury; Martin Schliep; Raymond J Ritchie; Anthony W D Larkum; Min Chen
Journal:  Photosynth Res       Date:  2009-07-07       Impact factor: 3.573

10.  Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina.

Authors:  Wesley D Swingley; Min Chen; Patricia C Cheung; Amber L Conrad; Liza C Dejesa; Jicheng Hao; Barbara M Honchak; Lauren E Karbach; Ahmet Kurdoglu; Surobhi Lahiri; Stephen D Mastrian; Hideaki Miyashita; Lawrence Page; Pushpa Ramakrishna; Soichirou Satoh; W Matthew Sattley; Yuichiro Shimada; Heather L Taylor; Tatsuya Tomo; Tohru Tsuchiya; Zi T Wang; Jason Raymond; Mamoru Mimuro; Robert E Blankenship; Jeffrey W Touchman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-05       Impact factor: 11.205
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