Literature DB >> 17026036

Multiscale modeling of liquids with molecular specificity.

G De Fabritiis1, R Delgado-Buscalioni, P V Coveney.   

Abstract

The separation between molecular and mesoscopic length and time scales poses a severe limit to molecular simulations of mesoscale phenomena. We describe a hybrid multiscale computational technique which addresses this problem by keeping the full molecular nature of the system where it is of interest and coarse graining it elsewhere. This is made possible by coupling molecular dynamics with a mesoscopic description of realistic liquids based on Landau's fluctuating hydrodynamics. We show that our scheme correctly couples hydrodynamics and that fluctuations, at both the molecular and continuum levels, are thermodynamically consistent. Hybrid simulations of sound waves in bulk water and reflected by a lipid monolayer are presented as illustrations of the scheme.

Entities:  

Year:  2006        PMID: 17026036     DOI: 10.1103/PhysRevLett.97.134501

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  8 in total

1.  Open-Boundary Molecular Dynamics of a DNA Molecule in a Hybrid Explicit/Implicit Salt Solution.

Authors:  Julija Zavadlav; Jurij Sablić; Rudolf Podgornik; Matej Praprotnik
Journal:  Biophys J       Date:  2018-04-09       Impact factor: 4.033

2.  Concurrent multiscale modelling of atomistic and hydrodynamic processes in liquids.

Authors:  Anton Markesteijn; Sergey Karabasov; Arturs Scukins; Dmitry Nerukh; Vyacheslav Glotov; Vasily Goloviznin
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2014-08-06       Impact factor: 4.226

Review 3.  Adaptive resolution simulations of biomolecular systems.

Authors:  Julija Zavadlav; Staš Bevc; Matej Praprotnik
Journal:  Eur Biophys J       Date:  2017-09-13       Impact factor: 1.733

4.  Advances in modelling of biomimetic fluid flow at different scales.

Authors:  Sujoy Kumar Saha; Gian Piero Celata
Journal:  Nanoscale Res Lett       Date:  2011-04-15       Impact factor: 4.703

Review 5.  Spatially extended hybrid methods: a review.

Authors:  Cameron A Smith; Christian A Yates
Journal:  J R Soc Interface       Date:  2018-02       Impact factor: 4.118

6.  Dissipative Particle Dynamics Simulation of Ultrasound Propagation through Liquid Water.

Authors:  Petra Papež; Matej Praprotnik
Journal:  J Chem Theory Comput       Date:  2022-01-10       Impact factor: 6.006

Review 7.  From adaptive resolution to molecular dynamics of open systems.

Authors:  Robinson Cortes-Huerto; Matej Praprotnik; Kurt Kremer; Luigi Delle Site
Journal:  Eur Phys J B       Date:  2021-09-23       Impact factor: 1.500

8.  Modeling and scale-bridging using machine learning: nanoconfinement effects in porous media.

Authors:  Nicholas Lubbers; Animesh Agarwal; Yu Chen; Soyoun Son; Mohamed Mehana; Qinjun Kang; Satish Karra; Christoph Junghans; Timothy C Germann; Hari S Viswanathan
Journal:  Sci Rep       Date:  2020-08-07       Impact factor: 4.996

  8 in total

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