Literature DB >> 17025669

Breaking bonds in the atomic force microscope: theory and analysis.

Felix Hanke1, Hans Jürgen Kreuzer.   

Abstract

A theoretical framework is developed to analyze molecular bond breaking in dynamic force spectroscopy using atomic force microscopy. An analytic expression of the observed bond breaking probability as a function of force is obtained in terms of the relevant physical parameters. The force-ramp mode is discussed in detail, which gives the best framework to extract the relevant physical parameters such as the potential depth and its width, if a set of widely different force-loading rates are used. We also show that the commonly used Ritchie-Evans model is incomplete and that it is only applicable for forces well below the maximum permitted by the potential. Statistical complications arising from the use of constant velocity experiments are discussed in detail.

Mesh:

Substances:

Year:  2006        PMID: 17025669     DOI: 10.1103/PhysRevE.74.031909

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

1.  Hidden multiple bond effects in dynamic force spectroscopy.

Authors:  Sebastian Getfert; Peter Reimann
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Anti-Arrhenius cleavage of covalent bonds in bottlebrush macromolecules on substrate.

Authors:  Natalia V Lebedeva; Alper Nese; Frank C Sun; Krzysztof Matyjaszewski; Sergei S Sheiko
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

3.  Effects of multiple-bond ruptures on kinetic parameters extracted from force spectroscopy measurements: revisiting biotin-streptavidin interactions.

Authors:  Senli Guo; Chad Ray; Andrea Kirkpatrick; Nimit Lad; Boris B Akhremitchev
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

4.  Stochastic simulation of single-molecule pulling experiments.

Authors:  V K Gupta
Journal:  Eur Phys J E Soft Matter       Date:  2014-10-28       Impact factor: 1.890

5.  Effect of viscoelasticity on the analysis of single-molecule force spectroscopy on live cells.

Authors:  V K Gupta; K B Neeves; C D Eggleton
Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

6.  Hierarchies, multiple energy barriers, and robustness govern the fracture mechanics of alpha-helical and beta-sheet protein domains.

Authors:  Theodor Ackbarow; Xuefeng Chen; Sinan Keten; Markus J Buehler
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-09       Impact factor: 11.205

7.  Size extensivity of elastic properties of alkane fragments.

Authors:  Milad Radiom; Plinio Maroni; Tomasz A Wesolowski
Journal:  J Mol Model       Date:  2018-01-08       Impact factor: 1.810

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.