Literature DB >> 17024373

A nonsense mutation-created intraexonic splice site is active in the lymphocytes, but not in the skeletal muscle of a DMD patient.

Van Khanh Tran1, Yasuhiro Takeshima, Zhujun Zhang, Yasuaki Habara, Kazuhiro Haginoya, Atsushi Nishiyama, Mariko Yagi, Masafumi Matsuo.   

Abstract

Production of semi-functional dystrophin mRNA from the dystrophin gene encoding a premature stop codon has been shown to modify the severe phenotype of Duchenne muscular dystrophy (DMD). In this study, we report the tissue-specific production of semi-functional dystrophin mRNA via activation of a nonsense mutation-created intraexonic splice acceptor site. In a DMD patient a novel nonsense mutation was identified in exon 42. In his lymphocytes semi-functional dystrophin mRNA with a 63-nucleotide deletion in exon 42 (dys-63) was found to be produced. In vitro splicing assay using hybrid minigenes disclosed that the mutation-created intraexonic splice acceptor site was activated. In his skeletal muscle cells, however, only the authentically spliced dystrophin mRNA was found. This finding identifies the modulation of the splicing of muscle dystrophin mRNA in cases of DMD as a potential target for therapeutic strategies to generate a milder phenotype for this disease.

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Year:  2006        PMID: 17024373     DOI: 10.1007/s00439-006-0241-y

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  7 in total

1.  Splicing analysis disclosed a determinant single nucleotide for exon skipping caused by a novel intraexonic four-nucleotide deletion in the dystrophin gene.

Authors:  Van Khanh Tran; Yasuhiro Takeshima; Zhujun Zhang; Mariko Yagi; Atsushi Nishiyama; Yasuaki Habara; Masafumi Matsuo
Journal:  J Med Genet       Date:  2006-05-31       Impact factor: 6.318

2.  Intravenous infusion of an antisense oligonucleotide results in exon skipping in muscle dystrophin mRNA of Duchenne muscular dystrophy.

Authors:  Yasuhiro Takeshima; Mariko Yagi; Hiroko Wada; Kazuto Ishibashi; Atsushi Nishiyama; Mikio Kakumoto; Toshiyuki Sakaeda; Ryuichi Saura; Katsuhiko Okumura; Masafumi Matsuo
Journal:  Pediatr Res       Date:  2006-05       Impact factor: 3.756

3.  Disruption of the splicing enhancer sequence within exon 27 of the dystrophin gene by a nonsense mutation induces partial skipping of the exon and is responsible for Becker muscular dystrophy.

Authors:  N Shiga; Y Takeshima; H Sakamoto; K Inoue; Y Yokota; M Yokoyama; M Matsuo
Journal:  J Clin Invest       Date:  1997-11-01       Impact factor: 14.808

4.  A G-to-A transition at the fifth position of intron-32 of the dystrophin gene inactivates a splice-donor site both in vivo and in vitro.

Authors:  Hoai Thu Thi Tran; Yasuhiro Takeshima; Agus Surono; Mariko Yagi; Hiroko Wada; Masafumi Matsuo
Journal:  Mol Genet Metab       Date:  2005-07       Impact factor: 4.797

5.  Seven novel additional small mutations and a new alternative splicing in the human dystrophin gene detected by heteroduplex analysis and restricted RT-PCR heteroduplex analysis of illegitimate transcripts.

Authors:  A M Barbieri; N Soriani; A Ferlini; A Michelato; M Ferrari; P Carrera
Journal:  Eur J Hum Genet       Date:  1996       Impact factor: 4.246

6.  An exon skipping-associated nonsense mutation in the dystrophin gene uncovers a complex interplay between multiple antagonistic splicing elements.

Authors:  A Disset; C F Bourgeois; N Benmalek; M Claustres; J Stevenin; Sylvie Tuffery-Giraud
Journal:  Hum Mol Genet       Date:  2006-02-06       Impact factor: 6.150

7.  Heterogous dystrophin mRNA produced by a novel splice acceptor site mutation in intermediate dystrophinopathy.

Authors:  Kayo Adachi; Yasuhiro Takeshima; Hiroko Wada; Mariko Yagi; Hajime Nakamura; Masafumi Matsuo
Journal:  Pediatr Res       Date:  2003-01       Impact factor: 3.756

  7 in total
  9 in total

1.  A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.

Authors:  Pablo Cingolani; Adrian Platts; Le Lily Wang; Melissa Coon; Tung Nguyen; Luan Wang; Susan J Land; Xiangyi Lu; Douglas M Ruden
Journal:  Fly (Austin)       Date:  2012 Apr-Jun       Impact factor: 2.160

2.  A novel splicing mutation in the IQSEC2 gene that modulates the phenotype severity in a family with intellectual disability.

Authors:  Irene Madrigal; Maria Isabel Alvarez-Mora; Jordi Rosell; Laia Rodríguez-Revenga; Olof Karlberg; Sascha Sauer; Ann-Christine Syvänen; Montserrat Mila
Journal:  Eur J Hum Genet       Date:  2016-01-06       Impact factor: 4.246

3.  Functional splicing analysis in an infantile case of atypical hemolytic uremic syndrome caused by digenic mutations in C3 and MCP genes.

Authors:  Tomohiko Yamamura; Kandai Nozu; Hiroaki Ueda; Rika Fujimaru; Ryutaro Hisatomi; Yoko Yoshida; Hideki Kato; Masaomi Nangaku; Toshiyuki Miyata; Toshihiro Sawai; Shogo Minamikawa; Hiroshi Kaito; Masafumi Matsuo; Kazumoto Iijima
Journal:  J Hum Genet       Date:  2018-03-19       Impact factor: 3.172

4.  In vivo and in vitro splicing assay of SLC12A1 in an antenatal salt-losing tubulopathy patient with an intronic mutation.

Authors:  Kandai Nozu; Kazumoto Iijima; Kazuo Kawai; Yoshimi Nozu; Atsushi Nishida; Yasuhiro Takeshima; Xue Jun Fu; Yuya Hashimura; Hiroshi Kaito; Koichi Nakanishi; Norishige Yoshikawa; Masafumi Matsuo
Journal:  Hum Genet       Date:  2009-06-10       Impact factor: 4.132

5.  Genomic features defining exonic variants that modulate splicing.

Authors:  Adam Woolfe; James C Mullikin; Laura Elnitski
Journal:  Genome Biol       Date:  2010-02-16       Impact factor: 13.583

6.  Production of beta-globin and adult hemoglobin following G418 treatment of erythroid precursor cells from homozygous beta(0)39 thalassemia patients.

Authors:  Francesca Salvatori; Giulia Breveglieri; Cristina Zuccato; Alessia Finotti; Nicoletta Bianchi; Monica Borgatti; Giordana Feriotto; Federica Destro; Alessandro Canella; Eleonora Brognara; Ilaria Lampronti; Laura Breda; Stefano Rivella; Roberto Gambari
Journal:  Am J Hematol       Date:  2009-11       Impact factor: 10.047

7.  Chemical treatment enhances skipping of a mutated exon in the dystrophin gene.

Authors:  Atsushi Nishida; Naoyuki Kataoka; Yasuhiro Takeshima; Mariko Yagi; Hiroyuki Awano; Mitsunori Ota; Kyoko Itoh; Masatoshi Hagiwara; Masafumi Matsuo
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

8.  An in vitro splicing assay reveals the pathogenicity of a novel intronic variant in ATP6V0A4 for autosomal recessive distal renal tubular acidosis.

Authors:  Tomohiko Yamamura; Kandai Nozu; Yuya Miyoshi; Keita Nakanishi; Junya Fujimura; Tomoko Horinouchi; Shogo Minamikawa; Nobuo Mori; Rika Fujimaru; Koichi Nakanishi; Takeshi Ninchoji; Hiroshi Kaito; Taniguchi-Ikeda Mariko; Ichiro Morioka; Masafumi Matsuo; Kazumoto Iijima
Journal:  BMC Nephrol       Date:  2017-12-04       Impact factor: 2.388

9.  Human Splicing Finder: an online bioinformatics tool to predict splicing signals.

Authors:  François-Olivier Desmet; Dalil Hamroun; Marine Lalande; Gwenaëlle Collod-Béroud; Mireille Claustres; Christophe Béroud
Journal:  Nucleic Acids Res       Date:  2009-04-01       Impact factor: 16.971

  9 in total

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