Literature DB >> 17021120

Evaluation of molecular-Beacon, TaqMan, and fluorescence resonance energy transfer probes for detection of antibiotic resistance-conferring single nucleotide polymorphisms in mixed Mycobacterium tuberculosis DNA extracts.

Hasan Yesilkaya1, Francesca Meacci, Stefan Niemann, Doris Hillemann, Sabine Rüsch-Gerdes, Michael R Barer, Peter W Andrew, Marco R Oggioni.   

Abstract

The ability of fluorescence resonance energy transfer, molecular-beacon, and TaqMan probes to detect single nucleotide polymorphism (SNP) in the presence of a wild-type allele was evaluated using drug resistance-conferring SNPs in mixed Mycobacterium tuberculosis DNA. It was found that both the absolute quantity and the ratio of alleles determine the detection sensitivity of the probe systems.

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Year:  2006        PMID： 17021120      PMCID： PMC1594805          DOI： 10.1128/JCM.00225-06

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  18 in total

Review 1.  The genetics and biochemistry of isoniazid resistance in mycobacterium tuberculosis.

Authors:  R A Slayden; C E Barry
Journal:  Microbes Infect       Date:  2000-05       Impact factor: 2.700

2.  High prevalence of KatG Ser315Thr substitution among isoniazid-resistant Mycobacterium tuberculosis clinical isolates from northwestern Russia, 1996 to 2001.

Authors:  Igor Mokrousov; Olga Narvskaya; Tatiana Otten; Elena Limeschenko; Lidia Steklova; Boris Vyshnevskiy
Journal:  Antimicrob Agents Chemother       Date:  2002-05       Impact factor: 5.191

Review 3.  Strategies against multidrug-resistant tuberculosis.

Authors:  R Loddenkemper; D Sagebiel; A Brendel
Journal:  Eur Respir J Suppl       Date:  2002-07

4.  Molecular characterization of isoniazid-resistant Mycobacterium tuberculosis clinical isolates in Lithuania.

Authors:  Daiva Bakonyte; Aurelija Baranauskaite; Jurate Cicenaite; Anaida Sosnovskaja; Petras Stakenas
Journal:  Antimicrob Agents Chemother       Date:  2003-06       Impact factor: 5.191

5.  Influence of the quantity of nonspecific DNA and repeated freezing and thawing of samples on the quantification of DNA by the Light Cycler.

Authors:  B Bellete; P Flori; J Hafid; H Raberin; R Tran Manh Sung
Journal:  J Microbiol Methods       Date:  2003-10       Impact factor: 2.363

Review 6.  The use of real-time PCR methods in DNA sequence variation analysis.

Authors:  Neil J Gibson
Journal:  Clin Chim Acta       Date:  2005-09-22       Impact factor: 3.786

7.  Detection of rifampin resistance in Mycobacterium tuberculosis in a single tube with molecular beacons.

Authors:  H H El-Hajj; S A Marras; S Tyagi; F R Kramer; D Alland
Journal:  J Clin Microbiol       Date:  2001-11       Impact factor: 5.948

Review 8.  Rapid detection of resistance in Mycobacterium tuberculosis: a review discussing molecular approaches.

Authors:  D García de Viedma
Journal:  Clin Microbiol Infect       Date:  2003-05       Impact factor: 8.067

Review 9.  A review on SNP and other types of molecular markers and their use in animal genetics.

Authors:  Alain Vignal; Denis Milan; Magali SanCristobal; André Eggen
Journal:  Genet Sel Evol       Date:  2002 May-Jun       Impact factor: 4.297

Review 10.  Detection of single nucleotide polymorphisms.

Authors:  Pui-Yan Kwok; Xiangning Chen
Journal:  Curr Issues Mol Biol       Date:  2003-04       Impact factor: 2.081
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  16 in total

1.  Development and evaluation of a novel single-nucleotide-polymorphism real-time PCR assay for rapid detection of fluoroquinolone-resistant Mycoplasma bovis.

Authors:  M Ben Shabat; I Mikula; I Gerchman; I Lysnyansky
Journal:  J Clin Microbiol       Date:  2010-06-09       Impact factor: 5.948

2.  Surpassing specificity limits of nucleic acid probes via cooperativity.

Authors:  Brent C Satterfield; Matt Bartosiewicz; Jay A A West; Michael R Caplan
Journal:  J Mol Diagn       Date:  2010-03-19       Impact factor: 5.568

3.  Multiplex real-time PCR melting curve assay to detect drug-resistant mutations of Mycobacterium tuberculosis.

Authors:  Tao Luo; Lili Jiang; Weiming Sun; G Fu; Jian Mei; Qian Gao
Journal:  J Clin Microbiol       Date:  2011-07-13       Impact factor: 5.948

4.  Single-nucleotide polymorphism (SNP) genotyping using cationic conjugated polymers in homogeneous solution.

Authors:  Xinrui Duan; Wei Yue; Libing Liu; Zhengping Li; Yuliang Li; Fuchu He; Daoben Zhu; Gangqiao Zhou; Shu Wang
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

5.  Fast test for assessing the susceptibility of Mycobacterium tuberculosis to isoniazid and rifampin by real-time PCR.

Authors:  Maria Gisele Gonçalves; Lucila Okuyama Fukasawa; Rosangela Siqueira Oliveira; Maristela Marques Salgado; Lee H Harrison; Kathleen A Shutt; Claudio Tavares Sacchi
Journal:  Mem Inst Oswaldo Cruz       Date:  2012-11       Impact factor: 2.743

6.  Multiplex assay based on single-nucleotide polymorphisms for rapid identification of Brucella isolates at the species level.

Authors:  Julie C Scott; Mark S Koylass; Michael R Stubberfield; Adrian M Whatmore
Journal:  Appl Environ Microbiol       Date:  2007-09-21       Impact factor: 4.792

7.  Rapid detection of ERG11 gene mutations in clinical Candida albicans isolates with reduced susceptibility to fluconazole by rolling circle amplification and DNA sequencing.

Authors:  Huiping Wang; Fanrong Kong; Tania C Sorrell; Bin Wang; Paul McNicholas; Namfon Pantarat; David Ellis; Meng Xiao; Fred Widmer; Sharon Ca Chen
Journal:  BMC Microbiol       Date:  2009-08-14       Impact factor: 3.605

8.  Two new rapid SNP-typing methods for classifying Mycobacterium tuberculosis complex into the main phylogenetic lineages.

Authors:  David Stucki; Bijaya Malla; Simon Hostettler; Thembela Huna; Julia Feldmann; Dorothy Yeboah-Manu; Sonia Borrell; Lukas Fenner; Iñaki Comas; Mireia Coscollà; Sebastien Gagneux
Journal:  PLoS One       Date:  2012-07-20       Impact factor: 3.240

9.  Digital PCR to detect and quantify heteroresistance in drug resistant Mycobacterium tuberculosis.

Authors:  Suporn Pholwat; Suzanne Stroup; Suporn Foongladda; Eric Houpt
Journal:  PLoS One       Date:  2013-02-27       Impact factor: 3.240

10.  Rapid identification of Brucella isolates to the species level by real time PCR based single nucleotide polymorphism (SNP) analysis.

Authors:  Krishna K Gopaul; Mark S Koylass; Catherine J Smith; Adrian M Whatmore
Journal:  BMC Microbiol       Date:  2008-06-02       Impact factor: 3.605
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