Literature DB >> 17020280

Energetics of an n --> pi interaction that impacts protein structure.

Jonathan A Hodges1, Ronald T Raines.   

Abstract

[structure: see text] The trans/cis ratio of the amide bond in N-formylproline phenylesters correlates with electron withdrawal by a para substituent. The slope of the Hammett plot (rho = 0.26) is indicative of a substantial effect. This effect arises from a favorable n --> pi interaction between the amide oxygen and ester carbonyl. In a polypeptide chain, an analogous interaction can stabilize the conformation of trans peptide bonds, alpha-helices, and polyproline type-II helices.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17020280      PMCID: PMC2625295          DOI: 10.1021/ol061569t

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  23 in total

1.  Conformational stability of collagen relies on a stereoelectronic effect.

Authors:  L E Bretscher; C L Jenkins; K M Taylor; M L DeRider; R T Raines
Journal:  J Am Chem Soc       Date:  2001-01-31       Impact factor: 15.419

Review 2.  Insights on the conformational stability of collagen.

Authors:  Cara L Jenkins; Ronald T Raines
Journal:  Nat Prod Rep       Date:  2002-02       Impact factor: 13.423

3.  The discovery of the alpha-helix and beta-sheet, the principal structural features of proteins.

Authors:  David Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-09       Impact factor: 11.205

Review 4.  Dominant forces in protein folding.

Authors:  K A Dill
Journal:  Biochemistry       Date:  1990-08-07       Impact factor: 3.162

5.  The molecular structure of collagen.

Authors:  A RICH; F H CRICK
Journal:  J Mol Biol       Date:  1961-10       Impact factor: 5.469

6.  The pleated sheet, a new layer configuration of polypeptide chains.

Authors:  L PAULING; R B COREY
Journal:  Proc Natl Acad Sci U S A       Date:  1951-05       Impact factor: 11.205

7.  The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain.

Authors:  L PAULING; R B COREY; H R BRANSON
Journal:  Proc Natl Acad Sci U S A       Date:  1951-04       Impact factor: 11.205

8.  Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution.

Authors:  J Bella; M Eaton; B Brodsky; H M Berman
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

9.  Principles that govern the folding of protein chains.

Authors:  C B Anfinsen
Journal:  Science       Date:  1973-07-20       Impact factor: 47.728

10.  Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations.

Authors:  Michele L DeRider; Steven J Wilkens; Michael J Waddell; Lynn E Bretscher; Frank Weinhold; Ronald T Raines; John L Markley
Journal:  J Am Chem Soc       Date:  2002-03-20       Impact factor: 15.419

View more
  38 in total

1.  A conserved interaction with the chromophore of fluorescent proteins.

Authors:  Amit Choudhary; Kimberli J Kamer; Ronald T Raines
Journal:  Protein Sci       Date:  2011-12-21       Impact factor: 6.725

2.  Non-covalent interactions: Fold globally, bond locally.

Authors:  Neal J Zondlo
Journal:  Nat Chem Biol       Date:  2010-08       Impact factor: 15.040

3.  Construction of peptoids with all trans-amide backbones and peptoid reverse turns via the tactical incorporation of N-aryl side chains capable of hydrogen bonding.

Authors:  Joseph R Stringer; J Aaron Crapster; Ilia A Guzei; Helen E Blackwell
Journal:  J Org Chem       Date:  2010-09-17       Impact factor: 4.354

4.  Phosphorylation Increases Persistence Length and End-to-End Distance of a Segment of Tau Protein.

Authors:  Alexander F Chin; Dmitri Toptygin; W Austin Elam; Travis P Schrank; Vincent J Hilser
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

Review 5.  An evaluation of peptide-bond isosteres.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Chembiochem       Date:  2011-07-12       Impact factor: 3.164

6.  Stabilization of the collagen triple helix by O-methylation of hydroxyproline residues.

Authors:  Frank W Kotch; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2008-02-14       Impact factor: 15.419

7.  Atomic resolution structure of the cytoplasmic domain of Yersinia pestis YscU, a regulatory switch involved in type III secretion.

Authors:  George T Lountos; Brian P Austin; Sreedevi Nallamsetty; David S Waugh
Journal:  Protein Sci       Date:  2009-02       Impact factor: 6.725

8.  Signatures of n→π* interactions in proteins.

Authors:  Robert W Newberry; Gail J Bartlett; Brett VanVeller; Derek N Woolfson; Ronald T Raines
Journal:  Protein Sci       Date:  2014-03       Impact factor: 6.725

9.  Signature of n→π* interactions in α-helices.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Protein Sci       Date:  2011-04-26       Impact factor: 6.725

10.  Stereoelectronic effects on the transition barrier of polyproline conformational interconversion.

Authors:  Yi-Chun Chiang; Yu-Ju Lin; Jia-Cherng Horng
Journal:  Protein Sci       Date:  2009-09       Impact factor: 6.725

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.