Literature DB >> 17015838

Structural basis for understanding oncogenic p53 mutations and designing rescue drugs.

Andreas C Joerger1, Hwee Ching Ang, Alan R Fersht.   

Abstract

The DNA-binding domain of the tumor suppressor p53 is inactivated by mutation in approximately 50% of human cancers. We have solved high-resolution crystal structures of several oncogenic mutants to investigate the structural basis of inactivation and provide information for designing drugs that may rescue inactivated mutants. We found a variety of structural consequences upon mutation: (i) the removal of an essential contact with DNA, (ii) creation of large, water-accessible crevices or hydrophobic internal cavities with no other structural changes but with a large loss of thermodynamic stability, (iii) distortion of the DNA-binding surface, and (iv) alterations to surfaces not directly involved in DNA binding but involved in domain-domain interactions on binding as a tetramer. These findings explain differences in functional properties and associated phenotypes (e.g., temperature sensitivity). Some mutants have the potential of being rescued by a generic stabilizing drug. In addition, a mutation-induced crevice is a potential target site for a mutant-selective stabilizing drug.

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Year:  2006        PMID: 17015838      PMCID: PMC1635156          DOI: 10.1073/pnas.0607286103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  The biological impact of the human master regulator p53 can be altered by mutations that change the spectrum and expression of its target genes.

Authors:  Daniel Menendez; Alberto Inga; Michael A Resnick
Journal:  Mol Cell Biol       Date:  2006-03       Impact factor: 4.272

2.  Quantitative analysis of residual folding and DNA binding in mutant p53 core domain: definition of mutant states for rescue in cancer therapy.

Authors:  A N Bullock; J Henckel; A R Fersht
Journal:  Oncogene       Date:  2000-03-02       Impact factor: 9.867

3.  The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect.

Authors:  J Xu; W A Baase; E Baldwin; B W Matthews
Journal:  Protein Sci       Date:  1998-01       Impact factor: 6.725

4.  Hot-spot mutants of p53 core domain evince characteristic local structural changes.

Authors:  K B Wong; B S DeDecker; S M Freund; M R Proctor; M Bycroft; A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

5.  Structure of the p53 core domain dimer bound to DNA.

Authors:  William C Ho; Mary X Fitzgerald; Ronen Marmorstein
Journal:  J Biol Chem       Date:  2006-05-22       Impact factor: 5.157

6.  Human tumor-derived p53 proteins exhibit binding site selectivity and temperature sensitivity for transactivation in a yeast-based assay.

Authors:  C J Di Como; C Prives
Journal:  Oncogene       Date:  1998-05-14       Impact factor: 9.867

7.  Isolation of temperature-sensitive p53 mutations from a comprehensive missense mutation library.

Authors:  Kazuko Shiraishi; Shunsuke Kato; Shuang-Yin Han; Wen Liu; Kazunori Otsuka; Masato Sakayori; Takanori Ishida; Motohiro Takeda; Ryunosuke Kanamaru; Noriaki Ohuchi; Chikashi Ishioka
Journal:  J Biol Chem       Date:  2003-10-13       Impact factor: 5.157

8.  Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations.

Authors:  Y Cho; S Gorina; P D Jeffrey; N P Pavletich
Journal:  Science       Date:  1994-07-15       Impact factor: 47.728

9.  Refined solution structure of the oligomerization domain of the tumour suppressor p53.

Authors:  G M Clore; J Ernst; R Clubb; J G Omichinski; W M Kennedy; K Sakaguchi; E Appella; A M Gronenborn
Journal:  Nat Struct Biol       Date:  1995-04

10.  Stability and folding of the tumour suppressor protein p16.

Authors:  K S Tang; B J Guralnick; W K Wang; A R Fersht; L S Itzhaki
Journal:  J Mol Biol       Date:  1999-01-29       Impact factor: 5.469

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  129 in total

1.  Restoration of DNA-binding and growth-suppressive activity of mutant forms of p53 via a PCAF-mediated acetylation pathway.

Authors:  Ricardo E Perez; Chad D Knights; Geetaram Sahu; Jason Catania; Vamsi K Kolukula; Daniel Stoler; Adolf Graessmann; Vasily Ogryzko; Michael Pishvaian; Christopher Albanese; Maria Laura Avantaggiati
Journal:  J Cell Physiol       Date:  2010-11       Impact factor: 6.384

2.  Stabilization of mutant p53 via alkylation of cysteines and effects on DNA binding.

Authors:  Joel L Kaar; Nicolas Basse; Andreas C Joerger; Elaine Stephens; Trevor J Rutherford; Alan R Fersht
Journal:  Protein Sci       Date:  2010-12       Impact factor: 6.725

3.  Molecular dynamics simulations of p53 DNA-binding domain.

Authors:  Qiang Lu; Yu-Hong Tan; Ray Luo
Journal:  J Phys Chem B       Date:  2007-09-08       Impact factor: 2.991

4.  The novel p53 isoform "delta p53" is a misfolded protein and does not bind the p21 promoter site.

Authors:  Maria M García-Alai; Henning Tidow; Eviatar Natan; Fiona M Townsley; Dmitry B Veprintsev; Alan R Fersht
Journal:  Protein Sci       Date:  2008-07-11       Impact factor: 6.725

5.  DIVE: a data intensive visualization engine.

Authors:  Dennis Bromley; Steven J Rysavy; Robert Su; Rudesh D Toofanny; Tom Schmidlin; Valerie Daggett
Journal:  Bioinformatics       Date:  2013-12-13       Impact factor: 6.937

6.  Effects of stability on the biological function of p53.

Authors:  Kian Hoe Khoo; Sebastian Mayer; Alan R Fersht
Journal:  J Biol Chem       Date:  2009-08-21       Impact factor: 5.157

7.  p53 binding to nucleosomal DNA depends on the rotational positioning of DNA response element.

Authors:  Geetaram Sahu; Difei Wang; Claudia B Chen; Victor B Zhurkin; Rodney E Harrington; Ettore Appella; Gordon L Hager; Akhilesh K Nagaich
Journal:  J Biol Chem       Date:  2009-11-03       Impact factor: 5.157

8.  TP53 Germline Variations Influence the Predisposition and Prognosis of B-Cell Acute Lymphoblastic Leukemia in Children.

Authors:  Maoxiang Qian; Xueyuan Cao; Meenakshi Devidas; Wenjian Yang; Cheng Cheng; Yunfeng Dai; Andrew Carroll; Nyla A Heerema; Hui Zhang; Takaya Moriyama; Julie M Gastier-Foster; Heng Xu; Elizabeth Raetz; Eric Larsen; Naomi Winick; W Paul Bowman; Paul L Martin; Elaine R Mardis; Robert Fulton; Gerard Zambetti; Michael Borowitz; Brent Wood; Kim E Nichols; William L Carroll; Ching-Hon Pui; Charles G Mullighan; William E Evans; Stephen P Hunger; Mary V Relling; Mignon L Loh; Jun J Yang
Journal:  J Clin Oncol       Date:  2018-01-04       Impact factor: 44.544

9.  TP53 mutational landscape of metastatic head and neck cancer reveals patterns of mutation selection.

Authors:  Apostolos Klinakis; Theodoros Rampias
Journal:  EBioMedicine       Date:  2020-07-30       Impact factor: 8.143

10.  A novel p53 mutant found in iatrogenic urothelial cancers is dysfunctional and can be rescued by a second-site global suppressor mutation.

Authors:  Adam F Odell; Luke R Odell; Jon M Askham; Hiba Alogheli; Sreenivasan Ponnambalam; Monica Hollstein
Journal:  J Biol Chem       Date:  2013-04-23       Impact factor: 5.157

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