Literature DB >> 17015045

Thermal stability landscape for Klenow DNA polymerase as a function of pH and salt concentration.

Allison J Richard1, Chin-Chi Liu, Alexandra L Klinger, Matthew J Todd, Tara M Mezzasalma, Vince J LiCata.   

Abstract

The thermal denaturation of Klenow DNA polymerase has been characterized over a wide variety of solution conditions to obtain a relative stability landscape for the protein. Measurements were conducted utilizing a miniaturized fluorescence assay that measures Tm based on the increase in the fluorescence of 1,8-anilinonaphthalene sulfonate (ANS) when the protein denatures. The melting temperature (Tm) for Klenow increases as the salt concentration is increased and as the pH is decreased. Klenow's Tm spans a range of over 20 degrees C, from 40 to 62 degrees C, depending upon the solution conditions. The landscape reconciles and extends previously measured Tm values for Klenow. Salt effects on the stability of Klenow show strong cation dependence overlaid onto a more typical Hofmeister anion type dependence. Cationic stabilization of proteins has been far less frequently documented than anionic stabilization. The monovalent cations tested stabilize Klenow with the following hierarchy: NH4+>Na+>Li+>K+. Of the divalent cations tested: Mg+2 and Mn+2 significantly stabilize the protein, while Ni+2 dramatically destabilizes the protein. Stability measurements performed in combined Mg+2 plus Na+ salts suggest that the stabilizing effects of these monovalent and divalent cations are synergistic. The cationic stabilization of Klenow can be well explained by a model postulating dampening of repulsion within surface anionic patches on the protein.

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Year:  2006        PMID: 17015045     DOI: 10.1016/j.bbapap.2006.08.011

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  6 in total

1.  Why Hofmeister effects of many salts favor protein folding but not DNA helix formation.

Authors:  Laurel M Pegram; Timothy Wendorff; Robert Erdmann; Irina Shkel; Dana Bellissimo; Daniel J Felitsky; M Thomas Record
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

2.  Thermodynamics of the DNA structural selectivity of the Pol I DNA polymerases from Escherichia coli and Thermus aquaticus.

Authors:  Andy J Wowor; Kausiki Datta; Hiromi S Brown; Gregory S Thompson; Sreerupa Ray; Anne Grove; Vince J LiCata
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

3.  Using Correlated Monte Carlo Sampling for Efficiently Solving the Linearized Poisson-Boltzmann Equation Over a Broad Range of Salt Concentration.

Authors:  Marcia O Fenley; Michael Mascagni; James McClain; Alexander R J Silalahi; Nikolai A Simonov
Journal:  J Chem Theory Comput       Date:  2010-01-01       Impact factor: 6.006

4.  Thermal stability of lysozyme as a function of ion concentration: a reappraisal of the relationship between the Hofmeister series and protein stability.

Authors:  Jordan W Bye; Robert J Falconer
Journal:  Protein Sci       Date:  2013-09-20       Impact factor: 6.725

5.  Buffer optimization of thermal melt assays of Plasmodium proteins for detection of small-molecule ligands.

Authors:  Gregory J Crowther; Alberto J Napuli; Andrew P Thomas; Diana J Chung; Kuzma V Kovzun; David J Leibly; Lisa J Castaneda; Janhavi Bhandari; Christopher J Damman; Raymond Hui; Wim G J Hol; Frederick S Buckner; Christophe L M J Verlinde; Zhongsheng Zhang; Erkang Fan; Wesley C van Voorhis
Journal:  J Biomol Screen       Date:  2009-05-21

6.  The role of electrostatic interactions on klentaq1 insight for domain separation.

Authors:  Santi Nurbaiti; Muhamad A Martoprawiro; Rukman Hertadi
Journal:  Bioinform Biol Insights       Date:  2012-10-30
  6 in total

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