Literature DB >> 17012800

Crystallization and preliminary X-ray analysis of Atg3.

Yuya Yamada1, Nobuo N Suzuki, Yuko Fujioka, Yoshinobu Ichimura, Yoshinori Ohsumi, Fuyuhiko Inagaki.   

Abstract

Atg3 is an E2-like enzyme that catalyzes the conjugation reaction between Atg8 and phosphatidylethanolamine (PE). The Atg8-PE conjugate is essential for autophagy, the bulk degradation process of cytoplasmic components by the vacuolar/lysosomal system. Crystals of Saccharomyces cerevisiae Atg3 have been obtained by the sitting-drop vapour-diffusion method using ammonium sulfate and lithium sulfate as precipitants. A native data set was collected from a single crystal to 2.5 A resolution. The crystals belong to space group P4(1) or P4(3), with unit-cell parameters a = 59.33, c = 115.22 A, and are expected to contain one protein molecule per asymmetric unit.

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Year:  2006        PMID: 17012800      PMCID: PMC2225171          DOI: 10.1107/S1744309106036098

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

Review 1.  Molecular dissection of autophagy: two ubiquitin-like systems.

Authors:  Y Ohsumi
Journal:  Nat Rev Mol Cell Biol       Date:  2001-03       Impact factor: 94.444

Review 2.  Ubiquitin and ubiquitin-like proteins as multifunctional signals.

Authors:  Rebecca L Welchman; Colin Gordon; R John Mayer
Journal:  Nat Rev Mol Cell Biol       Date:  2005-08       Impact factor: 94.444

3.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  A ubiquitin-like system mediates protein lipidation.

Authors:  Y Ichimura; T Kirisako; T Takao; Y Satomi; Y Shimonishi; N Ishihara; N Mizushima; I Tanida; E Kominami; M Ohsumi; T Noda; Y Ohsumi
Journal:  Nature       Date:  2000-11-23       Impact factor: 49.962

5.  Structural basis for the specificity and catalysis of human Atg4B responsible for mammalian autophagy.

Authors:  Kenji Sugawara; Nobuo N Suzuki; Yuko Fujioka; Noboru Mizushima; Yoshinori Ohsumi; Fuyuhiko Inagaki
Journal:  J Biol Chem       Date:  2005-09-23       Impact factor: 5.157

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Apg7p/Cvt2p: A novel protein-activating enzyme essential for autophagy.

Authors:  I Tanida; N Mizushima; M Kiyooka; M Ohsumi; T Ueno; Y Ohsumi; E Kominami
Journal:  Mol Biol Cell       Date:  1999-05       Impact factor: 4.138

8.  In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy.

Authors:  Yoshinobu Ichimura; Yuko Imamura; Kazuo Emoto; Masato Umeda; Takeshi Noda; Yoshinori Ohsumi
Journal:  J Biol Chem       Date:  2004-07-23       Impact factor: 5.157

9.  The crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8.

Authors:  Kenji Sugawara; Nobuo N Suzuki; Yuko Fujioka; Noboru Mizushima; Yoshinori Ohsumi; Fuyuhiko Inagaki
Journal:  Genes Cells       Date:  2004-07       Impact factor: 1.891

10.  The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway.

Authors:  T Kirisako; Y Ichimura; H Okada; Y Kabeya; N Mizushima; T Yoshimori; M Ohsumi; T Takao; T Noda; Y Ohsumi
Journal:  J Cell Biol       Date:  2000-10-16       Impact factor: 10.539

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  1 in total

1.  Atg12-Atg5 conjugate enhances E2 activity of Atg3 by rearranging its catalytic site.

Authors:  Machiko Sakoh-Nakatogawa; Kazuaki Matoba; Eri Asai; Hiromi Kirisako; Junko Ishii; Nobuo N Noda; Fuyuhiko Inagaki; Hitoshi Nakatogawa; Yoshinori Ohsumi
Journal:  Nat Struct Mol Biol       Date:  2013-03-17       Impact factor: 15.369

  1 in total

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