Literature DB >> 17012571

Starkeya koreensis sp. nov., isolated from rice straw.

Wan-Taek Im1, Zubair Aslam1, Myungjin Lee2, Leonid N Ten3,1, Deok-Chun Yang4, Sung-Taik Lee1.   

Abstract

A facultatively chemolithoautotrophic, Gram-negative, aerobic, highly curved rod-shaped, non-motile, non-spore-forming bacterium, strain Jip08(T), was isolated from rice straw in Daejeon, South Korea. Strain Jip08(T) produced colourless colonies (1.0-1.5 mm) on R2A medium after 3 days. On the basis of 16S rRNA gene sequence similarity, strain Jip08(T) was shown to belong to the alpha-2 subclass of the Proteobacteria, and was most closely related to Starkeya novella IAM 12100(T) (98.6 %), Angulomicrobium tetraedale DSM 5895(T) (98.1 %), Angulomicrobium amanitiforme NCIMB 1785(T) (98.0 %), Ancylobacter aquaticus ATCC 25396(T) (96.6 %) and Methylorhabdus multivorans DM13(T) (95.8 %), all of which belong to the family Hyphomicrobiaceae. The genomic DNA G+C content of strain Jip08(T) was 69 mol%. Chemotaxonomic data [major ubiquinone, Q-10; major fatty acids, C(18 : 1) isomer (summed feature of C(18 : 1)omega7c/omega9t/omega12t), C(19 : 0) cyclo omega8c and C(16 : 0)], 16S rRNA gene sequence analyses and some morphological and physiological features supported the affiliation of strain Jip08(T) to the genus Starkeya. However, DNA-DNA hybridization data and some phenotypic properties showed that strain Jip08(T) could be distinguished from the single known Starkeya species and represented a novel species, for which the name Starkeya koreensis sp. nov. is proposed. The type strain is Jip08(T) (=KCTC 12212(T)=NBRC 100963(T)=IAM 15215(T)).

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Year:  2006        PMID: 17012571     DOI: 10.1099/ijs.0.64093-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  3 in total

1.  Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides.

Authors:  Mircea Podar; Joel Turner; Leah H Burdick; Dale A Pelletier
Journal:  Microbiol Resour Announc       Date:  2020-07-02

2.  Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).

Authors:  Ulrike Kappler; Karen Davenport; Scott Beatson; Susan Lucas; Alla Lapidus; Alex Copeland; Kerrie W Berry; Tijana Glavina Del Rio; Nancy Hammon; Eileen Dalin; Hope Tice; Sam Pitluck; Paul Richardson; David Bruce; Lynne A Goodwin; Cliff Han; Roxanne Tapia; John C Detter; Yun-Juan Chang; Cynthia D Jeffries; Miriam Land; Loren Hauser; Nikos C Kyrpides; Markus Göker; Natalia Ivanova; Hans-Peter Klenk; Tanja Woyke
Journal:  Stand Genomic Sci       Date:  2012-09-26

Review 3.  Prerequisites for amplicon pyrosequencing of microbial methanol utilizers in the environment.

Authors:  Steffen Kolb; Astrid Stacheter
Journal:  Front Microbiol       Date:  2013-09-05       Impact factor: 5.640

  3 in total

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